Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01206 ATGGCCGCTTCCGCTTCCAATGCCGTGCTTCTCGGAGACGTTTACTTGGAAGACGTGACGGCCAAGCCTTCCGGCGTTCACTTCAGAGAACGAATGCGCCGAGGGGCGCTGCGAGCCACCGTGAACCTCCCTAGGCCAAGACCGCTCAGTGCTCTTTTGAATTTCGGCTGTTCGACTTCCGACGCGTGTTGGAGGAGTTGGAACCAGAGCTCGCTCCCTGGAGCCAAGAATTCCTCGTTCGCTTGCTGCTCCGCGGAGACTACGCCGCATGTTCAGCACCTTGCTACATCGACGTTTGCAATAGACCAGACTAATTTTGGTGGCGAGAGGTTGAAGCTATTTTCAGGGTCATGTTACCTACCACACCCGGATAAGGAGGACACGGGTGGGGAGGATGCACATTTTATTTGCACTGATGAACAAGCAATCGGTGTTGCAGATGGGGTAGGTGGCTGGGCAGATGTTGGTGTTAATGCTGGACTGTTTGCTAGAGAACTCATGTCCCATTCTGTTAGGGCAGTTGAAGAGGAACCCAAAGGTTCTATTAATCCAGCAAGGGTTTTGGAGAAGGCTCATTCATGTACAAAGGCTAGGGGTTCTTCAACAGCTTGTATCATTGCTCTTACCGATGTGGGGCTACATGCCATTAATCTGGGTGACAGTGGGTTCATTGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCTGTTCAACAGCATGACTTCAATTTTACATATCAACTGGAGAGTGGTAATGGAGGTGATCTTCCCAGCTCTGGCGAGGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCATTGCTGGAACAGATGGATTGTTTGACAATCTGTACAATGATGAGGTAGCTGAAGTTGTTTTACATGCAATTAGAGCCGGACTAGAACCCCGAGTAACTGCTCAGAAGATATCAGCACTAGCCCGTCAGCGAGCACAGGACAGGACTAGGCAGACACCATTTTCTACTGCTGCTCAAGAGGCTGGGTTCCGTTATTATGGTGGAAAGCTTGATGACATAACAGTTGTTGTGTCATACATAACTGGCTCAACATGTATGAGTTTTTTGCCATGTTAA 1095 0.4941 MAASASNAVLLGDVYLEDVTAKPSGVHFRERMRRGALRATVNLPRPRPLSALLNFGCSTSDACWRSWNQSSLPGAKNSSFACCSAETTPHVQHLATSTFAIDQTNFGGERLKLFSGSCYLPHPDKEDTGGEDAHFICTDEQAIGVADGVGGWADVGVNAGLFARELMSHSVRAVEEEPKGSINPARVLEKAHSCTKARGSSTACIIALTDVGLHAINLGDSGFIVVRDGCTIFRSPVQQHDFNFTYQLESGNGGDLPSSGEVFTIPVAPGDVVIAGTDGLFDNLYNDEVAEVVLHAIRAGLEPRVTAQKISALARQRAQDRTRQTPFSTAAQEAGFRYYGGKLDDITVVVSYITGSTCMSFLPC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01206 364 SUPERFAMILY PP2C-like 118 351 IPR036457 -
Cca11g01206 364 SMART PP2C_SIG_2 127 353 IPR001932 -
Cca11g01206 364 PANTHER PROTEIN PHOSPHATASE 2C 1 357 IPR039123 -
Cca11g01206 364 PANTHER PROTEIN PHOSPHATASE 1 357 - -
Cca11g01206 364 Gene3D - 255 358 IPR036457 -
Cca11g01206 364 SMART PP2C_4 104 351 IPR001932 -
Cca11g01206 364 Pfam Stage II sporulation protein E (SpoIIE) 141 351 IPR001932 -
Cca11g01206 364 Gene3D - 124 249 IPR036457 -
Cca11g01206 364 ProSiteProfiles PPM-type phosphatase domain profile. 117 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01206 Cca-Chr11 30382703 30386839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01206 K17508 - gmx:100784475 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01369 06 28539272 28542102 Cca11g01206 11 30382703 30386839 PCT