Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01369 ATGATACCTGGCATTCTCTCAAGGCTGAATGCCACCATTTACTGTCGTATTCGGGAAGCAATAATAACACGGCAACAGGGAGTGCCAATATCCTTGTATAGGAATTCAGCTCTGTCTCTTTCTTCACTCCATTCAGCTTCCTTTTTGCCCTGTTCCACTCCATGCTCTTCAGCACTCAACACAAAATCAATGGCTACTGCCTCGCATTCCAATGCTCTGCTGGGAGATGTTTATGTTGATGGATTAATCTCAAGATGTGGCAGTGTGCTAGACTACACAAAGCCTTCTGTTGTGTACTGCAATGACAGAACCCATAGAGGTGGCCTGAGAGCTAGTGTGAATCTAAGGAGATCACAACCTTTGTATGGTTCTTTGAGTTGTGGATGTTCCTCTTTGGATGTTAATCGGCGGATCCGGGGTTTGAGTTTGCTTCCTGGGTCGTGGCTCAGGAATTTTTCTACATCTTCTTCTGCTTCCTGTCCAGCTGGGGCAGCACAGGATGTCTCATTTGGTGGCAGCACTCCTGATGAACAGCTTGCAAGTTCCTCTTATTCGTCTGATCTAACTACTGTTGGTGGCAAGATCTTGAAGATGATTTCAGGATCTTGTTACCTACCGCATCCAGATAAGGAGGAGACTGGAGGAGAGGATGCTCATTTTATTTGCACAGATGAACAAGCAAttggtgttgctgatggtgtaggtggctgggcagatgttggtgttAATGCAGGACTGTTTTCCCGGGAACTTGTATCCAATTCAGTGAGAGCAATTCAAGAGGAGCCCAAAGGTTCTTTTAATCCAACAAGGGTGTTAGAGAAGGCTCACTCAAATACAAAGGCCAAGGGTTCATCAACAGCTTGTATCGTTGCCCTTACTGACAAGGGACTACATGCTATTAACTTGGGTGACAGCGGATTCATTGTGGTTAGAGATGGATGCACCATTTTCCAGTCCCCTGTTCAACAGCACGACTTCAATTTCACATATCAGTTGGAGAGTGGCAATGGTGCGGATCTACCCAGCTCTGGTGAGGTTTTTAGCATACCTGTTGCTTCAGGAGATGTGATCATTGCTGGAACAGATGGCTTATTTGACAACTTGTACAATAGTGAGATCACTGCAGTTGTTGTGCATGCAATCAGGGATGGACTGGAGCCACAAGTAACTGCTCAGAAGATAGCAGCACTGGCTCGACAGCGAGCACTGGACAAGAGTAGGCCAACACCATTTTCTACTGCTGCTCAGGAGGCTGGATTCCGTTATTATGGTGGCAAACTTGATGACATAACTGTTGTTGTGTCATACATATCCGACTAA 1323 0.4422 MIPGILSRLNATIYCRIREAIITRQQGVPISLYRNSALSLSSLHSASFLPCSTPCSSALNTKSMATASHSNALLGDVYVDGLISRCGSVLDYTKPSVVYCNDRTHRGGLRASVNLRRSQPLYGSLSCGCSSLDVNRRIRGLSLLPGSWLRNFSTSSSASCPAGAAQDVSFGGSTPDEQLASSSYSSDLTTVGGKILKMISGSCYLPHPDKEETGGEDAHFICTDEQAIGVADGVGGWADVGVNAGLFSRELVSNSVRAIQEEPKGSFNPTRVLEKAHSNTKAKGSSTACIVALTDKGLHAINLGDSGFIVVRDGCTIFQSPVQQHDFNFTYQLESGNGADLPSSGEVFSIPVASGDVIIAGTDGLFDNLYNSEITAVVVHAIRDGLEPQVTAQKIAALARQRALDKSRPTPFSTAAQEAGFRYYGGKLDDITVVVSYISD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01369 440 SMART PP2C_4 189 436 IPR001932 -
Cca06g01369 440 PANTHER PROTEIN PHOSPHATASE 48 439 - -
Cca06g01369 440 SUPERFAMILY PP2C-like 202 436 IPR036457 -
Cca06g01369 440 SMART PP2C_SIG_2 198 438 IPR001932 -
Cca06g01369 440 ProSiteProfiles PPM-type phosphatase domain profile. 199 438 IPR001932 -
Cca06g01369 440 Gene3D - 338 440 IPR036457 -
Cca06g01369 440 Gene3D - 207 334 IPR036457 -
Cca06g01369 440 PANTHER PROTEIN PHOSPHATASE 2C 48 439 IPR039123 -
Cca06g01369 440 Pfam Stage II sporulation protein E (SpoIIE) 226 436 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01369 Cca-Chr6 28539272 28542102 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01369 K17508 - gmx:100785804 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01369 06 28539272 28542102 Cca06g01369 06 28539272 28542102 ECH
Cca06g01369 06 28539272 28542102 Cca11g01206 11 30382703 30386839 PCT