LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g01194	ATGTGGCGGTGCGTGGCTCGTGCGATTCGCGTACCAGCTTCGGAGAGATCCAATCCACTTAGATCTCACGTTTCAAGATTTTTCTCTAGTGGTGGGAACTCGTCGTACAACGTTGTCGATCACAAGTACGATGCGGTTGTCGTGGGTGCTGGTGGTGCAGGGTTGAGAGCCGCCATTGGACTTTCGGAACATGGCTTCAACACTGCTTGCATTACCAAGCTATTCCCAACTCGTTCGCACACTGTTGCAGCTCAGGGAGGTATAAATGCTGCATTGGGAAATATGAGTGAAGATGATTGGAGGTGGCACATGTATGACACTGTTAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTTGAGAACTATGGATTGCCATTTTCACGAACTGAAGATGGGAAAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGGAAAGGTGGCCAGGCATATCGTTGCGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGGCATAATACCCAGTTTTTTGTGGAATATTTTGCATTAGATCTATTAATGAACAATGATGGTAGTTGCCAAGGAGTGATTGCCTTGAATATGGAGGATGGAACATTACACCGTTTCCAAGCTGCTTCGACAATTTTGGCCACAGGGGGCTATGGTAGAGCATACTTTTCTGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCACTCGAGGATTTAGAGTTTGTGCAATTTCACCCGACCGGCATATATGGAGCTGGCTGCCTTATCACAGAAGGTTCTCGGGGTGAAGGAGGAATTCTTAGGAACAGTGAGGGTGAGAGGTTTATGGAACGCTATGCTCCTACAGCGAAGGATCTTGCATCAAGGGATGTAGTTTCTAGATCAATGACTATGGAAATCCGGGAAGGCCGTGGAGTAGGACCCCTGAAAGATCACATATATCTCCACTTGAATCACTTACCCCCAGATGTTCTCAAGGAGAGACTACCTGGTATCTCTGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACTAAGGAACCTATTCCTGTTTTGCCAACAGTGCATTACAACATGGGTGGTATTCCCACGAATCATCATGGAGAGGTGGTTACTATTAAAGGTGACGATCCAGATGCAGTAGTTTCTGGATTAATGGCTGCTGGGGAAACAGCCTGTGCTTCAGTCCATGGTGCAAATAGGCTTGGTGCAAATTCACTTCTTGATATTGTTGTTTTCGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCGTAGCCCAGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTATGAAAACAATTACTTGGCTGGACAAATTGAGAAATTCAAATGGGTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAATAATGCAGAACAATGCTGCTGTATTCCGTACCCAAGAAACATTAGAAGAAGGTTGTCAATTAATTGACAAAGCATGGGAGAGCTTTCATGATGTCATGTTGAAGGATCGAAGTTTGATATGGAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCTCGTGAGGACTTCACGAAAAGAGATGATGAGAACTGGATGAAACATACTTTAGGATATTGGGAGAATGAGAAGGTCCGGTTAGGTTACAGACCGGTGCACATGAATACATTGGATGATGAGGTTGAATCATTCCCTCCTAAAGCTCGTGTTTATTAA	1884	0.4501	MWRCVARAIRVPASERSNPLRSHVSRFFSSGGNSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNNDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDAVVSGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIRSPGEKQKPLEKDAGMKTITWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFHDVMLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLGYRPVHMNTLDDEVESFPPKARVY	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g01194	627	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	44	627	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Cca11g01194	627	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	78	87	IPR003952	GO:0016491
	Cca11g01194	627	Gene3D	-	44	451	IPR036188	-
	Cca11g01194	627	SUPERFAMILY	FAD/NAD(P)-binding domain	37	463	IPR036188	-
	Cca11g01194	627	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	16	627	IPR030664	-
	Cca11g01194	627	Gene3D	-	467	577	-	-
	Cca11g01194	627	Gene3D	succinate dehydrogenase protein domain	578	627	-	-
	Cca11g01194	627	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	272	390	IPR027477	-
	Cca11g01194	627	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	41	627	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Cca11g01194	627	Pfam	FAD binding domain	44	440	IPR003953	-
	Cca11g01194	627	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	282	385	IPR027477	-
	Cca11g01194	627	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	486	627	IPR037099	GO:0016491
	Cca11g01194	627	Pfam	Fumarate reductase flavoprotein C-term	496	627	IPR015939	GO:0016491
	Cca11g01194	627	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	16	627	-	-
	Cca11g01194	627	PIRSF	SDHA_APRA_LASPO	33	616	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g01194	Cca-Chr11	30071016	30078512	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g01194	K00234		-	gmx:100802169	1216.83

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca06g01350	06	28327605	28334243	Cca11g01194	11	30071016	30078512	PCT