Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01350 ATGTGGCGCTGCATCGCTCGCGGACTTCGTGGACCTGCCTCCACCAGATCCACCCCCAACCACCCACTCCGATCTCACCTTTCTAGATTCTTCTCTAGTGGGGTGAACTCTTCCTACACCGTGGTCGACCATACTTACGACGCCGTCGTCGTGGGTGCTGGTGGCGCCGGATTGAGGGCTGCTATTGGGCTTTCGGAACATGGCTTCAATACTGCTTGTATCACCAAGCTCTTCCCAACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAATATGACGGAAGATGACTGGAGGTGGCACATGTATGATACTGTCAAGGGAAGTGATTGGCTAGGAGATCAAGATGCCATCCAATATATGTGTAGGGAAGCACCAAAGGCGGTCATTGAGCTAGAGAATTATGGATTACCATTTTCTCGAACAGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTATGGAAAAGGTGGTCAAGCTTACCGCTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGACACAATACCCAGTTTTTTGTGGAATATTTTGCTTTGGATCTTTTAATGAATAGTGATGGAAGTTGCCAAGGAGTAATTGCCTTGAATATGGAGGATGGAACGCTCCATCGTTTCCAAGCTGCTTCAACGATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACATACATGTACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGCATTCCTCTCGAGGATTTGGAGTTTGTGCAATTTCACCCAACCGGTATATATGGAGCAGGTTGCCTCATCACGGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGAAATAGTGAGGGTGAGCGATTTATGGAACGATATGCCCCTACTGCAAAGGATCTTGCATCAAGGGATGTAGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGGCCCCTGAAAGATCACATCTACCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGACGTTACAAAGGAACCTATTCCTGTTTTGCCAACTGTACATTATAACATGGGTGGTATTCCCACAAACCATCATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATGCAGTGGTTCCTGGATTGATGGCTGCTGGGGAAACAGCCTGTGCATCAGTCCATGGCGCCAATAGGCTTGGTGCAAATTCACTTCTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAGTCCGTAGACCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGTCAGAAAACAATTGCGTGGCTGGACAAATTGAGAAATTCAAATGGTTCGTTGCCAACCTCAAAAATTCGGTTGAATATGCAGCGAGTGATGCAAAGCAATGCTGCTGTATTCCGTACACAAGAGACCTTAGAAGAAGGTTGTCAATTAATCGATAAAACGTGGGAGAGCTTCCATGATGTCAAGTTGGAGGACCGAAGTTTGATATGGAACTCCGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCATGCATCACAATGCACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTTAAGACTAGAGATGATGAGAACTGGATGAAACACACTGTGGGATTCTGGGAGAACGAGAAGGTCAGGTTGGATTACAGGCCAGTGCATATGAATACATTGGATGATGAGGTTGAATCATTTCCTCCCAAGGCTCGCGTGTATTAA 1893 0.4628 MWRCIARGLRGPASTRSTPNHPLRSHLSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEVRRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFHDVKLEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFKTRDDENWMKHTVGFWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01350 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 489 630 IPR037099 GO:0016491
Cca06g01350 630 Gene3D - 470 581 - -
Cca06g01350 630 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 47 630 IPR014006 GO:0016627|GO:0022900|GO:0050660
Cca06g01350 630 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 630 IPR030664 -
Cca06g01350 630 PIRSF SDHA_APRA_LASPO 36 620 - -
Cca06g01350 630 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 285 388 IPR027477 -
Cca06g01350 630 Gene3D - 47 454 IPR036188 -
Cca06g01350 630 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 44 630 IPR011281 GO:0006099|GO:0016627|GO:0050660
Cca06g01350 630 Pfam Fumarate reductase flavoprotein C-term 499 630 IPR015939 GO:0016491
Cca06g01350 630 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 630 - -
Cca06g01350 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 275 393 IPR027477 -
Cca06g01350 630 SUPERFAMILY FAD/NAD(P)-binding domain 38 466 IPR036188 -
Cca06g01350 630 Gene3D succinate dehydrogenase protein domain 582 630 - -
Cca06g01350 630 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 81 90 IPR003952 GO:0016491
Cca06g01350 630 Pfam FAD binding domain 47 443 IPR003953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01350 Cca-Chr6 28327605 28334243 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01350 K00234 - gmx:100818379 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01350 06 28327605 28334243 Cca06g01350 06 28327605 28334243 ECH
Cca06g01350 06 28327605 28334243 Cca11g01194 11 30071016 30078512 PCT