Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00970 ATGAGAATTTTCCCAGACAAGTTCTTCACCAAAGTCCGCAGCTTCATAGGCCTCGGACTCGCTTCCTCCACTTCCGCCGCCGCTGCCGCGGCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCTGCCGCGGCGGCGTCTTCTTCTTCTCCTTCCGCCACCGCCACTTCTTCTGACGCCGCCGATACTTCATCCTCCTATTCTTCTTCCTCCGAGGCAGAAACCGCCCACCGGAAAACACTGAACACGAAGCTCTGCATCATAGGAAGCGGCCCGGCGGCGCACACCGCCGCCGTATACGCGGCGCGCGCGGAGCTGAAGCCGGTCCTCTTCGAAGGCTGGATGGCCAACGGCGTCGCTCCCGGCGGCCAGCTCACCACCACCACCGACGTCGAGAACTTTCCGGGATTTCCGGCCGGCATACTCGGCGCCGAGCTGATGGACCGCTGCCGCCAGCAGTCCATGCGCTTCGGCGCCGAGGTCGTCACGGAAACCGTGACGACCGTGGATTTCTCCAAACGGCCGTTTAGGGTTTTCACCGATTCCACCACTGTTGAGGCCGAATCCGTCATCATCGCCACCGGCGCCATTGCCAAGCGGCTGAATTTTGACGGCGCCGGTGACGGCCCCAACGGATTCTGGAACCGTGGGATATCGGCGTGCGCCGTGTGTGACGGCGCCGCACCGATATTCCGGAAACGGCCGCTGGCCGTGATCGGTGGCGGCGATTCGGCGATGGAGGAAGCTTGCTTCCTGTCCAAGTTTGGTTCTAAAGTGTATATAGTTCATAGGAGGGACAAGTTTAGGGCTTCTAAGATCATGCAGGGGAAGGTGATGAGAAATCCCAAAATTGAGGTGTTGTGGAATTCAGAGGTGGTTGGGGCTTATGGGGATGATAAGGGTAGTGTTCTTGGGGGCCTTAAGGTGAAGAATGTGGTGACTGGGGTTGTGACTGATTTGAAGGTTTCTGGTTTGTTCTTTGCAATTGGGCATGAACCTGCCACAAAGTTCTTGGATGGTCAACTTGAATTGGACTCTGATGGGTACATTGTGACCAAACCTGGCACCACGAAGACTAGTGTTGAGGGAGTTTTTGCTGCTGGGGATGTCCAGGATAAGAAGTATAGGCAAGCTGTTACTGCTGCTGGCACTGGGTGTATGGCAGCCTTGGATGCAGAACATTACTTGCAAGGGATTGGTTTGCAGGAGGGTAAGAGTGTTTGA 1482 0.4636 MRIFPDKFFTKVRSFIGLGLASSTSAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAASSSSPSATATSSDAADTSSSYSSSSEAETAHRKTLNTKLCIIGSGPAAHTAAVYAARAELKPVLFEGWMANGVAPGGQLTTTTDVENFPGFPAGILGAELMDRCRQQSMRFGAEVVTETVTTVDFSKRPFRVFTDSTTVEAESVIIATGAIAKRLNFDGAGDGPNGFWNRGISACAVCDGAAPIFRKRPLAVIGGGDSAMEEACFLSKFGSKVYIVHRRDKFRASKIMQGKVMRNPKIEVLWNSEVVGAYGDDKGSVLGGLKVKNVVTGVVTDLKVSGLFFAIGHEPATKFLDGQLELDSDGYIVTKPGTTKTSVEGVFAAGDVQDKKYRQAVTAAGTGCMAALDAEHYLQGIGLQEGKSV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00970 493 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 166 489 - -
Cca11g00970 493 PANTHER THIOREDOXIN REDUCTASE 166 489 - -
Cca11g00970 493 TIGRFAM TRX_reduct: thioredoxin-disulfide reductase 170 482 IPR005982 GO:0004791|GO:0005737|GO:0019430
Cca11g00970 493 MobiDBLite consensus disorder prediction 136 158 - -
Cca11g00970 493 Pfam Pyridine nucleotide-disulphide oxidoreductase 170 471 IPR023753 GO:0016491
Cca11g00970 493 Gene3D - 289 420 IPR036188 -
Cca11g00970 493 SUPERFAMILY FAD/NAD(P)-binding domain 165 482 IPR036188 -
Cca11g00970 493 PRINTS FAD-dependent pyridine nucleotide reductase signature 171 190 - -
Cca11g00970 493 PRINTS FAD-dependent pyridine nucleotide reductase signature 273 291 - -
Cca11g00970 493 PRINTS FAD-dependent pyridine nucleotide reductase signature 321 339 - -
Cca11g00970 493 PRINTS FAD-dependent pyridine nucleotide reductase signature 408 424 - -
Cca11g00970 493 PRINTS FAD-dependent pyridine nucleotide reductase signature 435 457 - -
Cca11g00970 493 Gene3D - 173 481 IPR036188 -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 170 192 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 208 223 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 229 239 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 274 282 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 300 312 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 317 341 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 369 385 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 410 431 - -
Cca11g00970 493 PRINTS Pyridine nucleotide disulphide reductase class-II signature 445 463 - -
Cca11g00970 493 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 307 329 IPR008255 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00970 Cca-Chr11 20793874 20796295 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00970 K00384 - gmx:100794363 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00970 11 20793874 20796295 Cca11g00970 11 20793874 20796295 ECH
Cca06g01154 06 25884793 25891916 Cca11g00970 11 20793874 20796295 PCT