Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01154 ATGAAATTTAGAATAGTTTGCCCTAATCAGAATTGGAAGAACCTCTTTACGAAGGCGCGAAACTTGCTCACTGTTGGACGCGCTTACGCTTCCTCCGCCGCCGCCATGCCTGACCTTCAGATCCACAAGACCAAACTCTGCATCATCGGAAgcggccccgccgcccacaccgccgccgtctacgccgcccgcgccgAGCTCAAGCCGCTCCTCTTCGAGGGCTGGATGGCCAACGACATCGCCCCCGGCGGCCAGCTCACCACCACCACCGACGTCGAGAACTTTCCCGGCTTCCCCGACGGCATCCTCGGCGGCGAGCTCATGGACCGCTGCCGCAAGCAGTCGCAGCGCTTCGGCACCGAGATCCACACCGAGACCGTCTCCAAGGTCGATTTCTCCGCCCGTCCCTTTAGGGTTTTCACCGATTCCCGCACCGTCGAGGCCGACGCCGTCATCGTCGCCACCGGCGCTGTCGCCAAGCGATTGCCGTTCACCGGCTCCGGCGACGGCCCCGACGGCTACTGGAACCGTGGCATCTCCGCGTGCGCCGTCTGCGACGGTGCCGCGCCGATTTTCCGGAACAAGCCGCTGGCGGTGATCGGCGGCGGGGACTCGGCCATGGAGGAGGCGACGTTCCTCACCAAGTACGGTTCCGAAGTTTACATAATCCACCGGAGGGACTCGTTCAGGGCCTCGAAGATAATGCAGAGCAAGGCCTTGAGCAATAGTAAGATCAAGGTGATTTGGAATTCGGTGGTGGTGGAGGCGTATGGTGATGGGGATAACAAGAGGGTTCTTGGGGGACTGAAGGTGAAGAATGTGGTGACACAAGAGGTTTCTGATTTGAAGGTTTTTGGGTTGTTTTTCGCAATTGGGCACGAGCCTGCGACCAAGTTTTTGGATGGTCAGCTTGAACTGGATTCTGATGGGTACATTGTCACGAAGCCAGGGACCACGAAGACCAGTGTTGAGGGAGTGTTTGCTGCTGGGGATGTTCAGGACAAGAAGTATAGGCAAGCTATTACCGCTGCTGGCACTGGATGCATGGCAGCGTTGGATGCAGAACATTACCTGCAAGGTATTGGTTTACAACAGGATAAGAGTGATTGA 1110 0.5459 MKFRIVCPNQNWKNLFTKARNLLTVGRAYASSAAAMPDLQIHKTKLCIIGSGPAAHTAAVYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPDGILGGELMDRCRKQSQRFGTEIHTETVSKVDFSARPFRVFTDSRTVEADAVIVATGAVAKRLPFTGSGDGPDGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSEVYIIHRRDSFRASKIMQSKALSNSKIKVIWNSVVVEAYGDGDNKRVLGGLKVKNVVTQEVSDLKVFGLFFAIGHEPATKFLDGQLELDSDGYIVTKPGTTKTSVEGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQGIGLQQDKSD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 45 67 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 83 98 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 104 114 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 149 157 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 175 187 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 192 216 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 244 260 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 286 307 - -
Cca06g01154 369 PRINTS Pyridine nucleotide disulphide reductase class-II signature 321 339 - -
Cca06g01154 369 PRINTS FAD-dependent pyridine nucleotide reductase signature 46 65 - -
Cca06g01154 369 PRINTS FAD-dependent pyridine nucleotide reductase signature 148 166 - -
Cca06g01154 369 PRINTS FAD-dependent pyridine nucleotide reductase signature 196 214 - -
Cca06g01154 369 PRINTS FAD-dependent pyridine nucleotide reductase signature 284 300 - -
Cca06g01154 369 PRINTS FAD-dependent pyridine nucleotide reductase signature 311 333 - -
Cca06g01154 369 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 40 365 - -
Cca06g01154 369 Gene3D - 48 357 IPR036188 -
Cca06g01154 369 Gene3D - 164 296 IPR036188 -
Cca06g01154 369 TIGRFAM TRX_reduct: thioredoxin-disulfide reductase 45 358 IPR005982 GO:0004791|GO:0005737|GO:0019430
Cca06g01154 369 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 182 204 IPR008255 GO:0016491
Cca06g01154 369 SUPERFAMILY FAD/NAD(P)-binding domain 41 358 IPR036188 -
Cca06g01154 369 Pfam Pyridine nucleotide-disulphide oxidoreductase 45 346 IPR023753 GO:0016491
Cca06g01154 369 PANTHER THIOREDOXIN REDUCTASE 40 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01154 Cca-Chr6 25884793 25891916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01154 K00384 - gmx:100790557 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01154 06 25884793 25891916 Cca06g01154 06 25884793 25891916 ECH
Cca06g01154 06 25884793 25891916 Cca11g00970 11 20793874 20796295 PCT