Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00967 ATGGACGTTCGCCGGCGACCCCTCCCCTCCTCCGGCGACCGACTCAAAACCCAGAAGCTCAAGAACACCGAATCCCAATCACTCTTCCCTCTCTACCTCACCAACGCCCTCTTCTTCACGCTCTTTTTCTCCGTCGCCTACTTCCTCCTCCACCGCTGGCGCGATAAGATCCGCACCTCCATCCCCCTCCACGTCGTCACCCCGGCCGAGATTGCCGCCATCGTCTCCCTCATCGCCTCCGCCGTCTACCTCCTTGGCTTCTTCGGCGTCGCCTCCCGCGCCTCCCTCGACGAGCTCTCCGACGATGAAATCATCCTCAAAGAAGACTCCCGCGCCCCGGGCCCCTGTCCCGCGGCGCTCGTCGAGTCTTCACCGGCAAAGGCAAAACAATTTCCTCTGCAGTCATGTGTCGACAGTCTAAATGTGACAGAAAAAACTAAAATTTCTCTGTCGCATAAGACTCTCGATAGAGTTGCAGAGGAAAAAGAAGTTCCTCTGCGGCATAAAACTGTCGACAGTCTGGCGACAAAGGAGTTGTCAATTCCTTTGCCGCTAAAAACTGCTGACGTGGCAGGGCCGATTTCGTTGTCCCATGAGGACGAGGAAACCGTACAGGCGGTGCTGTCGGGGTCGGTTCCGTCGTACTCGCTGGAGTCGCGGCTGGGGGATTGCCGGCGGGCGGCGGCGATTCGGCACGAGGCGGTGCAGAGGCTGACGGGGCGGTCGCTGGAGGGTTTGCCGGTGGCGGGGTTCGACTACGAGTCGATATTGGGGCAGTGCTGCGAGATGCCGATAGGGTTTGTGCAGATTCCGGTGGGGGTGGCGGGGCCGTTGTTGTTGGACGGGGAGGAATACACTGTGCCTATGGCCACCACCGAAGGGTGTCTCGTTGCGAGCACCAACAGAGGGTGCAAGGCTATTCACGTTTCCGGTGGAGCTTCCTCTGCGTTGCTTAGGGATGGCATGACCAGAGCACCCGTTGTTCGGTTTCCCTCTGCTCAGCGTGCCGCGCAGTTGAAGTTCTTCTTGGAGGATCCTCTCAACTTCGATTCGCTCGCTGTCGTTTTCAATAAGTCAAGCAGATTTGCCAGGTTACAGAGTATTCAGTGTGCTATTGCGGGCAAGAATTTGTACATGAGATTCCGTTGCAGCACTGGCGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCCGACATGGATGTTATTGGAATCTCTGGAAATTTCTGTTCAGACAAGAAAGCTGCAGCTGTGAACTGGATTGAAGGGCGTGGCAAGTCAGTGGTGTGTGAGGCTGTAATCAAGGAAGATGTGGTTAAGAAGGTATTGAAGACTAGCGTGGAGGCCCTAGTCGAGCTTAACATGCTTAAAAACCTTACAGGCTCAGCCATCGCAGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAATATCGTGTCTGCTATCTATATTGCCACTGGTCAGGATCCTGCTCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTCAATGATGGCAAGGATCTTCATATTTCTGTGACCATGCCCTCAGTTGAGGTTGGTACTGTTGGAGGGGGCACACAACTCGCATCTCAGTCTGCGTGTCTTAATTTACTTGGTGTCAAGGGTGCCAATAAAGAGTCTCCAGGTGCAAATTCTAGGTTACTGGCCACCATTATAGCCGGTTCTGTCCTTGCCGGAGAGCTGTCACTCATGTCTGCAATTGCAGCTGGACAACTTGTTAAGAGTCACATGAAATACAACAGATCTAGCAGGGATATCTCTAAAGTTGCCTCGTGA 1845 0.5382 MDVRRRPLPSSGDRLKTQKLKNTESQSLFPLYLTNALFFTLFFSVAYFLLHRWRDKIRTSIPLHVVTPAEIAAIVSLIASAVYLLGFFGVASRASLDELSDDEIILKEDSRAPGPCPAALVESSPAKAKQFPLQSCVDSLNVTEKTKISLSHKTLDRVAEEKEVPLRHKTVDSLATKELSIPLPLKTADVAGPISLSHEDEETVQAVLSGSVPSYSLESRLGDCRRAAAIRHEAVQRLTGRSLEGLPVAGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGEEYTVPMATTEGCLVASTNRGCKAIHVSGGASSALLRDGMTRAPVVRFPSAQRAAQLKFFLEDPLNFDSLAVVFNKSSRFARLQSIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEDVVKKVLKTSVEALVELNMLKNLTGSAIAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIIAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDISKVAS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00967 614 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 159 613 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 138 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 589 602 IPR023076 GO:0004420
Cca11g00967 614 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 194 593 IPR009029 GO:0015936|GO:0016616
Cca11g00967 614 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 321 437 IPR009023 -
Cca11g00967 614 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 200 604 IPR004554 GO:0004420|GO:0005515|GO:0008299
Cca11g00967 614 CDD HMG-CoA_reductase_classI 201 604 IPR004554 GO:0004420|GO:0005515|GO:0008299
Cca11g00967 614 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 260 281 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 287 307 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 378 396 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 418 443 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 469 495 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 523 544 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 Gene3D - 321 437 IPR009023 -
Cca11g00967 614 Gene3D - 271 591 IPR023074 GO:0004420
Cca11g00967 614 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 159 613 - -
Cca11g00967 614 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 138 - -
Cca11g00967 614 Pfam Hydroxymethylglutaryl-coenzyme A reductase 228 604 IPR002202 GO:0004420|GO:0015936
Cca11g00967 614 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 535 542 IPR023076 GO:0004420
Cca11g00967 614 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 380 394 IPR023076 GO:0004420
Cca11g00967 614 Gene3D - 195 270 IPR023282 GO:0004420
Cca11g00967 614 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 200 604 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00967 Cca-Chr11 20640656 20644636 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00967 2 610 Lipid Metabolism Gene Families AT1G76490 64.984 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00967 K00021 - gmx:100811237 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01155 06 25900769 25904484 Cca11g00967 11 20640656 20644636 ECH
Cca11g00967 11 20640656 20644636 Cca11g00967 11 20640656 20644636 ECH