Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01155 ATGGAAGTTCGCCGGCGACTCCTCCCCCGACCCTCCGCCGTCGAACccctcaaacacaaacacaaagacgacccacacccacacccacaGTCCTACTCCTACATCACCAACGCCCTCTTCTTCACCCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACcgatggcgggagaagatccgcacctccacccccctccacgtcctcacgctctccgagatcctcgccgtcctctccctcgtcgcctccgtcgtctacctcatggccttcttcggcattaccttcatcctccactcccgcccctcccccgacgacgacCTCGAAATcctcccacctccctgctcccccctcctccctccgccgccgccgctcccccACCACGACCAAGACATCGTCCGAGCCGTCGTCTCCGGCTCCATCCCCTCCTACTCCCTCGAGTCccgcctcgccgactgccgccgcgccgccaccattcgccgcgccgccgTGGAGCACGTGGCCGGACGGTCGCTCGACGGCCTCCCCCTGGAAGGGTTCGACTACGAGTCCATCCTGGGACAGTGCTGCGAGATGCCGATCGGCTTCGTTCAGATCCCGGTGGGCGTGGCCGGTCCTTTGCTCCTCGACGGTAAGGAGTACACCGTTCCCATGGCCACCACCGAGGGATGCCTCGTCGCCAGCACCAACCGTGGCTGCAAGGCCATTCACGCTTCCGGTGGCGCCTCCTCCGTGGTCCTCCGCGATGCCATGACCAGAGCCCCTGTGGTTAGATTCTCCTCCGCCAAACGCGCCTCTGAGCTTAAATTCTACTTGGAAGACCCTCACAATTTCGATTCCCTCTCTGTCGCTTTCAACAAGTCAAGCAGATTTGCGAAACTGCAAGACATCAAGTGTGCAATAGTAGGAAAGAATTTGTACATTAGATTGAGTTGCAGCACGGGGGATGCCATGGGGATGAACATGGTTTCCAAAGGAGTTCAAAACGTACTCGCTTTTCTTCACACTGATTTTCCTGACATGGATGTTATTGGAATATCTGGGAATTTCTGTTCGGATAAGAAAGCCGCGGCGGTCAACTGGATCGAGGGCCGAGGGAAGTCGGTGGTGTGCGAGGCTGTGATTAAGGAAGAGGTGCTCAACAAAGTGCTCAAGAGTAGCGTGGAGGCTTTAGTGGAGCTTAACATGTTGAAAAATCTTGCTGGTTCCGCCGCCGCGGGTGCTCTCGGTGGCTTCAACGCTCATGCTAGTAACATCGTTACTGCTATCTACATAGCCACTGGACAGGATCCAGCTCAGAATGTCGAGAGTTCACACTGTATAACTATGATGGAACCTGTCAACCATGGAAAGGACCTGCACGTCTCTGTCACCATGCCTTCGCTTGAGGTGGGTACAGTTGGAGGGGGCACACAATTGGCATCTCAATCAGCTTGTCTGAATTTACTTGGGGTTAAGGGTGCAAGCAAAGAGTCCCCAGGTGCAAATTCTAGGTTACTGGCAACCATAGTAGCTGGTTCAGTCCTTGCTGGGGAACTCTCACTCATGTCGGCAATTGCATCTGGACAGCTTGTTAATAGCCACATGAAATACAACAGATCTACCAAGGATATCACCAAAATTGTATCTTGA 1626 0.436 MEVRRRLLPRPSAVEPLKHKHKDDPHPHPQSYSYITNALFFTLFFSVAYFLLHRWREKIRTSTPLHVLTLSEILAVLSLVASVVYLMAFFGITFILHSRPSPDDDLEILPPPCSPLLPPPPPLPHHDQDIVRAVVSGSIPSYSLESRLADCRRAATIRRAAVEHVAGRSLDGLPLEGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIHASGGASSVVLRDAMTRAPVVRFSSAKRASELKFYLEDPHNFDSLSVAFNKSSRFAKLQDIKCAIVGKNLYIRLSCSTGDAMGMNMVSKGVQNVLAFLHTDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVLNKVLKSSVEALVELNMLKNLAGSAAAGALGGFNAHASNIVTAIYIATGQDPAQNVESSHCITMMEPVNHGKDLHVSVTMPSLEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIASGQLVNSHMKYNRSTKDITKIVS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01155 541 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 516 529 IPR023076 GO:0004420
Cca06g01155 541 Gene3D - 124 197 IPR023282 GO:0004420
Cca06g01155 541 CDD HMG-CoA_reductase_classI 129 531 IPR004554 GO:0004420|GO:0005515|GO:0008299
Cca06g01155 541 Pfam Hydroxymethylglutaryl-coenzyme A reductase 155 531 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 307 321 IPR023076 GO:0004420
Cca06g01155 541 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 127 531 IPR004554 GO:0004420|GO:0005515|GO:0008299
Cca06g01155 541 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 28 541 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 127 531 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 28 541 - -
Cca06g01155 541 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 462 469 IPR023076 GO:0004420
Cca06g01155 541 Gene3D - 248 364 IPR009023 -
Cca06g01155 541 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 187 208 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 214 234 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 305 323 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 345 370 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 396 422 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 450 471 IPR002202 GO:0004420|GO:0015936
Cca06g01155 541 Gene3D - 198 518 IPR023074 GO:0004420
Cca06g01155 541 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 249 364 IPR009023 -
Cca06g01155 541 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 122 520 IPR009029 GO:0015936|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01155 Cca-Chr6 25900769 25904484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01155 1 537 Lipid Metabolism Gene Families AT1G76490 67.637 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01155 K00021 - gmx:100786956 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01155 06 25900769 25904484 Cca11g00967 11 20640656 20644636 ECH
Cca06g01155 06 25900769 25904484 Cca06g01155 06 25900769 25904484 ECH