Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00947 ATGGGATTTTGGGAACTATTAGAGGTGGCTTCTGCACCAGTTATTCAAGTCTTACTTATCAGTTTAGTTGGAGTTTATATGGCAAGTGATTATTGTAATAATCTTCTTTCATCAAACTTTCGAAAATCCTTGAACAAGATTGTCTTCATTGCGTTCACTCCTTCACTTATATTTGTCAGTTTTGCCAAGAATGTTTCTCTTGACGAAATGATATCATGGTGGTTTATGCCCGTTAACATTGGATTTACCTTCTTAATTGGAGCGATTCTCGGATGGATAATTGTAAAATTATTAAAACCAAACTTGAAAGTGGAAGGACTTATTATTGCTTCATGTTCAACAGGAAACATGGGTAACCTTCCGGTTGTAATTATCCCTGCTATTTGTGATGAGAAAGGAGGTCCATTTGGTGCACCTGATGATTGTCGCAACAGGGCTCTCTCATATTCGTTTTGCTCTTTGGCGCTTGGTGGTGTCTTCATTTGGACATATACTTATCAACTAATGCGAAACACATCTATGAGATACAAGGCATTTGAGGCTGCTGAGATCTTAAAGATTCCCAACAAAGAGGTTGAGGCTAATGTAGAAACTCGCCTTCTCAAGCAAAATGATGGTTACACCATAGACACTGAGAATCAAGTTATTGTAGACCAATGTTCATCCATTGTATCAATAAATACGGAAAAAAATTTATGGCATAGAATGATGGAAACTATAGGTCAGATTCTTGCAGAACTAATGTCACCCCCAACAATTGCAACATTTTTAGGTTTCCTCTTTGGTGGAGTTGCATGGCTAAGGAACCTAATAATAGGGCATGATGCTCCACTACGAGTGATCCAAGAATCCATTCAAATGCTAGGGGATGGTACAATTCCTTGTATCACTGTTTTGCTTGGTGGCAACCTAACACAAGGCATGAAATCATCAAGTATCAAACCATTGATTCTCATTTGCATCATCATAGCTCGACTTTTCTTACTACCTGTTATTGGATTTTGTGTTGTTAAAGCGGCTGCAAACTTAGGTTTCCTTCCATTGGACCCTCTATTTCAGTATGTGTTGGTAATGCAATATGCCCTCCCACCTGCAATGAATATCAGTACCATGGCTCAACTATTTGATGTAGGCACTGAAGAGTATTCTGTTATTCTCTTGTGGACATATGGAGCTGCTACTATATCTCTCACTCTTTGGTCAGTATACCTTATGGGATATTTTATTAGATGA 1233 0.3828 MGFWELLEVASAPVIQVLLISLVGVYMASDYCNNLLSSNFRKSLNKIVFIAFTPSLIFVSFAKNVSLDEMISWWFMPVNIGFTFLIGAILGWIIVKLLKPNLKVEGLIIASCSTGNMGNLPVVIIPAICDEKGGPFGAPDDCRNRALSYSFCSLALGGVFIWTYTYQLMRNTSMRYKAFEAAEILKIPNKEVEANVETRLLKQNDGYTIDTENQVIVDQCSSIVSINTEKNLWHRMMETIGQILAELMSPPTIATFLGFLFGGVAWLRNLIIGHDAPLRVIQESIQMLGDGTIPCITVLLGGNLTQGMKSSSIKPLILICIIIARLFLLPVIGFCVVKAAANLGFLPLDPLFQYVLVMQYALPPAMNISTMAQLFDVGTEEYSVILLWTYGAATISLTLWSVYLMGYFIR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00947 410 Pfam Membrane transport protein 11 400 IPR004776 GO:0016021|GO:0055085
Cca11g00947 410 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 405 - -
Cca11g00947 410 PANTHER - 1 405 IPR045033 GO:0080162
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00947 Cca-Chr11 20184939 20191299 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00947 K24139 - gmx:100787850 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00947 11 20184939 20191299 Cca11g00947 11 20184939 20191299 ECH
Cca06g01151 06 25831846 25838377 Cca11g00947 11 20184939 20191299 PCT