Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01151 ATGGGGTTTCTGGAGCTTTTTACCGTGGCATCTATGCCGGTGATCAAAGTACTAATGATCACCGCAGTTGGCTTATTTCTTGCACTGGATAATGTGAATTTATTGGGAAAAGATGCAAGGATACAAGTGAATCATCTTGTTCATTATGTGTTTAATCCAGCACTGGTGGGTGGCAATTTGGCGGACACGATTACTTTTGAGAATGTTGTTTCATTGTGGTTCATGCCCGTCAATATCCTCCTTACGTTTATAATAGGCTCTGCCTTAGGATGGATCCTTGTCAAATTAACAAGGCCACCCAAACACTTGGAAGGACTAATATTGGGTGTCTGTTCTGCAGGAAATTTAGGAAACTTGCCTATAATCATTATCCCAGCTATATGTAAAGACAAAGGTAGTCCTTTTGGAGACTCCGATGTCTGCTATCGATATGGAATGGCTTATGCTTCACTTTCTATGGCGGTTGGAGCTGTTTATATATGGACTTATGTCTACAACATAATGCGAGTTTCCGCAAGTATAGTCCGCAAAGAAGATTATAGAACTAGCTCCTTCAAACTGGAGGCTTCAGGAGAGATACTAGAGTTACTCCAGGATGAAGAAACCTCAGAACCCAAAACTCCAGCAAAGGACAAAATGGATGATGCATACACCGTACTGCTTTCTTCAAATGAATCTGAAGACAAAGTGAAGGTACCAATCACAGTAAAAATCAAGCAACTATTTGGAAAGCTTTTAGTGAACTCCAGTTTCAGAGCCATATTTTCACCAGCAACTATTGGAGCGATTGTTGGCTTTATTATTGGTGTAGTCCCACAGATTCGTAAATTGATGATTGGCAGCGATGCCCCACTTCATGTGGTTGAAGACTCTGCTACCATGCTGGGTGAAGCCGCCGTGCCAGTTATAACCCTTATAATGGGTGCAAACCTCCTTAAAGGCTTGAAGGGAGCAAATACTTCGTTTTGGACTATCATTGGAATTATAGCAGTTAGATATATTTTCTTGCCAATTTTGGGTATACTTGTTATTAAAGGAGTAACACAGTTGGGGTTGGTGCAACCAGATCCATTATATCAGTTCATACTTCTCCTTCAATATGCCCTTCCCCCAGCTATGGCCATAGGCACAATCGCCCAGTTGTTTGGAGCTGGTGAAAGTGAATGCTCTATTATAATGCTATGGACATATGTTTTGGCATCAGTTGCGGTCACTCTTTGGTCAACCTACTTCATGTGGATCGTGGCttaa 1251 0.4157 MGFLELFTVASMPVIKVLMITAVGLFLALDNVNLLGKDARIQVNHLVHYVFNPALVGGNLADTITFENVVSLWFMPVNILLTFIIGSALGWILVKLTRPPKHLEGLILGVCSAGNLGNLPIIIIPAICKDKGSPFGDSDVCYRYGMAYASLSMAVGAVYIWTYVYNIMRVSASIVRKEDYRTSSFKLEASGEILELLQDEETSEPKTPAKDKMDDAYTVLLSSNESEDKVKVPITVKIKQLFGKLLVNSSFRAIFSPATIGAIVGFIIGVVPQIRKLMIGSDAPLHVVEDSATMLGEAAVPVITLIMGANLLKGLKGANTSFWTIIGIIAVRYIFLPILGILVIKGVTQLGLVQPDPLYQFILLLQYALPPAMAIGTIAQLFGAGESECSIIMLWTYVLASVAVTLWSTYFMWIVA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01151 416 Pfam Membrane transport protein 10 407 IPR004776 GO:0016021|GO:0055085
Cca06g01151 416 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 416 - -
Cca06g01151 416 PANTHER - 1 416 IPR045033 GO:0080162
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01151 Cca-Chr6 25831846 25838377 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01151 K24139 - gmx:100785182 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01151 06 25831846 25838377 Cca06g01151 06 25831846 25838377 ECH
Cca06g01151 06 25831846 25838377 Cca11g00947 11 20184939 20191299 PCT