Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00807 ATGGCACTGAGTAACAATGTGATAGGTGCCATTAACTTCGTTGCAGTGCTCCTCTCAATCCCAATCATTGCTGCTGGGATCTGGCTAACAACTTTGCCAGCGGATTCATGTGTCCAAATTCTACAATGGCCTGTTATCATATTAGGGGTTCTGATATTTGTTGTGGCTCTGGCAGGGTTCATAGGAGCCTTTTGGAGAATACCCTCACTTCTGGTATTCTACCTCGTGGCCATGCTAGGGCTTATTGTGTTGCTACTTTCGTTGGTGGTTTTCACCTATGCCGTTACCCTTAGAGGGCACGGGACCATTGAACCCAATCGGTCTTACTTGGAATATCGCATGGATGATTTCTCACTGTGGCTTCGCCGAAGGGTAAGAAGCTCCCACAAGTGGGATCGCATTAGGAGTTGTCTTAGCTCATCAAATATTTGTAGTGAGTTGGATCAAAGGTACCGAACGGCTCAAGACTTCTTCAATGCACACCTAACCCCCATTCAGTCAGGGTGCTGCAAGCCACCAACCAAATGTGGTTACACGTTTGTGAACCCTACCTATTGGATTAGCCCCATCAACACAGCAGAAGAAACGGATTGCATGAAATGGAGCAACGACCAAACACAACTTTGCTACAACTGTGACTCGTGTAAAGCTGGTTTGTTGGCAACCCTTAGGGTGGAGTGGAGGAGGGCCAATGTGATATTGATCATTACTTTGGTTGCTCTAATTGCAGTATACTTGGTAGGCTGCTTTGCCTTTAGGAATGCCAAAACTGAGGAGCTCTTTCGTAAATACAAGCAAGGCTACTCTTGA 810 0.463 MALSNNVIGAINFVAVLLSIPIIAAGIWLTTLPADSCVQILQWPVIILGVLIFVVALAGFIGAFWRIPSLLVFYLVAMLGLIVLLLSLVVFTYAVTLRGHGTIEPNRSYLEYRMDDFSLWLRRRVRSSHKWDRIRSCLSSSNICSELDQRYRTAQDFFNAHLTPIQSGCCKPPTKCGYTFVNPTYWISPINTAEETDCMKWSNDQTQLCYNCDSCKAGLLATLRVEWRRANVILIITLVALIAVYLVGCFAFRNAKTEELFRKYKQGYS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00807 269 Pfam Tetraspanin family 6 249 IPR018499 GO:0016021
Cca11g00807 269 PANTHER TETRASPANIN/PERIPHERIN-RELATED 1 268 - -
Cca11g00807 269 PANTHER TETRASPANIN-8-RELATED 1 268 IPR044991 GO:0009734|GO:0016021
Cca11g00807 269 PRINTS Transmembrane four family signature 6 29 - -
Cca11g00807 269 PRINTS Transmembrane four family signature 38 64 - -
Cca11g00807 269 PRINTS Transmembrane four family signature 65 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00807 Cca-Chr11 15382831 15385163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00807 1 269 Miscellaneous Gene Families AT5G46700 68.401 1.21e-128 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00807 - - gmx:100789266 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00807 11 15382831 15385163 Cca11g00807 11 15382831 15385163 ECH
Cca06g00963 06 23344612 23346359 Cca11g00807 11 15382831 15385163 PCT