Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00963 ATGGCAATGAGCAACAGTGTGATCGGAGCCATAAACTTCGTGGCAGTGATCCTCTCGATCCCAATCATCGGTGCCGGAATCTGGCTAATAAACGGCCAAGCCGATTCCTGCGTCCAGTTTCTACAATGGCCAGTGATCATCCTGGGAGTTCTCATCCTGGTTGTGTCTCTCGCAGGTTTCATTGGAGCCTTTTGGAGAATCTCTTGGCTCCTCATAATCTACCTCATTGCCATGCTCGTGCTTGTAATACTGCTAGTGTGTTTGGTGGTGTTCGTCTACATGGTCACTCTTCGAGGCCATGGCACCATTGAACCAAACCGTGCTTACTTGGAGTACCGCATGGATGATTTCTCGGGCTACCTTCGTCGAAGGGTGAGAAGCTCTTTCAAGTGGGATCGTATCAGAAGCTGTCTTAGCCAAACCAACATGTGTGCTGAGCTCAACCAGAGTTACCGAATGGCTCAGGACTTCTTTAACGCACGTCTAACCCCCATGCAGTCAGGGTGCTGCAAGCCACCGACGCAGTGTGCTTACACGTTTGTGAACCCAACTTATTGGATAAGCCCGATTAACACAGCAGCAGATATGGATTGCCTGCAGTGGAGCAACGACCAAACACAACTTTGCTACAACTGTGACTCGTGCAAGGCCGGTTTATTGGCAAATCTTAGGAAGGAGTGGAGAAGGGCCAATGTCATATTAATCATCACTGTCATTGTTTTAATAATCGTCTATTTGATAGGGTGTTGTGCCTTTAGAAACGCCAAAACTGAGGACCTCTTCCGCAAATACAAACAAGGCTATACTTAA 810 0.479 MAMSNSVIGAINFVAVILSIPIIGAGIWLINGQADSCVQFLQWPVIILGVLILVVSLAGFIGAFWRISWLLIIYLIAMLVLVILLVCLVVFVYMVTLRGHGTIEPNRAYLEYRMDDFSGYLRRRVRSSFKWDRIRSCLSQTNMCAELNQSYRMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWISPINTAADMDCLQWSNDQTQLCYNCDSCKAGLLANLRKEWRRANVILIITVIVLIIVYLIGCCAFRNAKTEDLFRKYKQGYT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00963 269 PRINTS Transmembrane four family signature 6 29 - -
Cca06g00963 269 PRINTS Transmembrane four family signature 38 64 - -
Cca06g00963 269 PRINTS Transmembrane four family signature 65 93 - -
Cca06g00963 269 Pfam Tetraspanin family 7 251 IPR018499 GO:0016021
Cca06g00963 269 PANTHER TETRASPANIN/PERIPHERIN-RELATED 1 268 - -
Cca06g00963 269 PANTHER TETRASPANIN-8-RELATED 1 268 IPR044991 GO:0009734|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00963 Cca-Chr6 23344612 23346359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00963 1 269 Miscellaneous Gene Families AT5G46700 71.004 7.62e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00963 - - gmx:100791755 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00963 06 23344612 23346359 Cca06g00963 06 23344612 23346359 ECH
Cca06g00963 06 23344612 23346359 Cca11g00807 11 15382831 15385163 PCT