Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00676 ATGAACAATATGAGCACCCTCTTTCTCTTTCTCCTTCTTTCAACACTACTCAACGTTGGTTTGTGTGGACGCGACCTAGGAGATAAAAACCCCTTCACGCAGAAGGCTTTCGTGGCACGCTATTGGGACAGCCACGTCATCAACAAGCTCCCAAAGCCGTCATTCCTTCTTTCCAAAGCCTCTCCAATGAGCGCCGCCGAAACGGCGTCGTTCGCCAAGCTTGCCGCCGCCAACACCCTCTCCACGCGGCTGCCGGAGTTATGCTCCGCCGCGCACCTCCTCTGCTTCCCGGAGGTCCGCCCCAGCCTTGAGAAACACTCCGAAGACGTCGATTTCACAACCTACAACGACGGGCAGAACTTCACCAACTACGGAACGAGTCGACCCGGCGGAATCGACTCGTTTAAGAACTACTCCAACGACCTCTTCAGCACTCCGGTCAATGACTTCCGCCGCTACAGCCGCGGCGCCGCCGGCCACGACGACAGCTTCGTCGGCTACGCCGGCGACACCAACGTCGCCGACCAGAGCTTCCACACATACGGCACGAACGCCGCCGGCGGCTCCGGCGAGTTCAAGCAGTACGCTACTAGTTCAAACGTCCCCGACCTGCGATTCACCACCTACTCCGACAGCACCGGCGGCAGGACGCAGTCGTTCTCCAGCTACAGCGAGGACGGCAACTCCGGCGGCCAGACATTCTCCAGCTACGGCAAAAACTCCGCCGGCGCCGCCAGCGAGTTCACCGGCTACGGAACGGAATCCAACGTGGCCTCGTCTAGTTTCACGAACTACGGCCAGAAAGGCGCGGGTCCCAACGACACGTTCACGAACTACGGCGTGAACATGAACGTTCCTGAAGAGAATTTCAAGAGCTATGCAGATGGAACCGTTGGTGGAACGCAGAGTTTTACCAACTATAGAGACCAGGCTAATGTTGGTGACGACTCTTTCCAATCCTACGCTAAGAACACCAAAGAAGGGACTCAAGTTGATTTCAATAACTACGGTAATTCCGCGAACCCAGGTACGGACACTTTCACTGGCTACGCTAAAGGAGCTCAAGGGGATCACAAAGTTGGTTTCACTCGTTATGGCGTTAACACTAACACCACGTTTAAGGATTATGCCAAAAATGGTGTTTCCTTTGCTACTTACAACACCTCTTCGTCGGTTAGTGGCAATTTGGTAAAAAGGTGGGTTGAACCGGGTAAGTTCTTTCGCGAGAAGATGCTTAAGGAAGGAACTATTATGCCGATGCCTGATATAAGAGACAAAATGCCACAAAGGTCATTTTTGCCCCGTTCTATTTTGACAAAATTGCCCTTCTCGTCTTCTAGGGTTGATGAGTTGAAGCGTGTATTCAAGGTTTCTGAAAACTCCTCTATGGACAAGATGATTATGGAGTCACTAGGCGAGTGCGAGAGGGCTGCTAGTGCAGGCGAGACCAAGCGTTGCGTGGGCTGTGTTGAGGATATGATTGATTTTGCAACCTCTCTTTTGGGTCACAATGTAGCAGTTTGGACCACCGAGAATGTGAATGGGTACAATAAGACTGTGATGGTGGGTCGGGTCAAAGGGATGAATGGTGGCAAAGTGACTCAGTCTGTGTCGTGTCACCAGAGCTTGTTCCCTTACTTACTTTACTATTGTCATTCCGTCCCTAAGGTTCGGGTATATGAAGCAGATCTTTTGGACCCAGAATCTAAGGTGAAGATAAATCATGGTGTTGCCATCTGTCACTTAGACACCACTGCATGGAGTCCCACCCACGGTGCTTTCTTGGCTCTCGGGTCCAGTCCAGGTCAAATTGAAGTGTGTCATTGGATCTTTCAAAATGACATGACTTGGACTGTTGCTGATTAA 1866 0.5182 MNNMSTLFLFLLLSTLLNVGLCGRDLGDKNPFTQKAFVARYWDSHVINKLPKPSFLLSKASPMSAAETASFAKLAAANTLSTRLPELCSAAHLLCFPEVRPSLEKHSEDVDFTTYNDGQNFTNYGTSRPGGIDSFKNYSNDLFSTPVNDFRRYSRGAAGHDDSFVGYAGDTNVADQSFHTYGTNAAGGSGEFKQYATSSNVPDLRFTTYSDSTGGRTQSFSSYSEDGNSGGQTFSSYGKNSAGAASEFTGYGTESNVASSSFTNYGQKGAGPNDTFTNYGVNMNVPEENFKSYADGTVGGTQSFTNYRDQANVGDDSFQSYAKNTKEGTQVDFNNYGNSANPGTDTFTGYAKGAQGDHKVGFTRYGVNTNTTFKDYAKNGVSFATYNTSSSVSGNLVKRWVEPGKFFREKMLKEGTIMPMPDIRDKMPQRSFLPRSILTKLPFSSSRVDELKRVFKVSENSSMDKMIMESLGECERAASAGETKRCVGCVEDMIDFATSLLGHNVAVWTTENVNGYNKTVMVGRVKGMNGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKVKINHGVAICHLDTTAWSPTHGAFLALGSSPGQIEVCHWIFQNDMTWTVAD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00676 621 MobiDBLite consensus disorder prediction 209 235 - -
Cca11g00676 621 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 621 - -
Cca11g00676 621 ProSiteProfiles BURP domain profile. 406 620 IPR004873 -
Cca11g00676 621 SMART BURP_2 404 620 IPR004873 -
Cca11g00676 621 Pfam BURP domain 406 618 IPR004873 -
Cca11g00676 621 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00676 Cca-Chr11 11261214 11263549 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00676 - - gmx:100779518 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00676 11 11261214 11263549 Cca11g00676 11 11261214 11263549 ECH
Cca06g00815 06 21160505 21162485 Cca11g00676 11 11261214 11263549 PCT