Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00667 ATGGTTGTTGATGTCTCCAAACAATATTTCCCTGATGTAGCTGTAGGGTATGAGGATCCTCGTGTGACACTTCATATCGGTGATGGAGTTGCATTTCTGAAGGCAGTTCCAGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAGGAGCTTTTTGAAAAGCCCTTCTTTCAATCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTGGTTTGTACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATTGTGGCCAATTGTCGCCATATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGACCAGCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGTGTCAGAAGTCAGTAAGACCACTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCATTTGCAAAGAGGAAGATTGGTTCTAAAGCTAATTAA 546 0.4231 MVVDVSKQYFPDVAVGYEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVAKALRPGGVVCTQAESIWLHMDIIEDIVANCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNPIDENECQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKAN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00667 181 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 1 128 IPR030374 -
Cca11g00667 181 PANTHER SPERMIDINE SYNTHASE-RELATED 1 181 - -
Cca11g00667 181 CDD AdoMet_MTases 3 80 - -
Cca11g00667 181 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 176 IPR029063 -
Cca11g00667 181 Pfam Spermine/spermidine synthase domain 1 136 - -
Cca11g00667 181 Gene3D Vaccinia Virus protein VP39 1 181 IPR029063 -
Cca11g00667 181 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 181 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00667 Cca-Chr11 11047064 11051556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00667 K00797 - gmx:100776863 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00667 11 11047064 11051556 Cca11g00667 11 11047064 11051556 ECH
Cca06g00809 06 21087556 21090961 Cca11g00667 11 11047064 11051556 PCT