Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00809 ATGGCTGCGGAGAACGTAGTTGAGAGCAGAGACTTACCCACAAAGAGGCAAAGGGAAGAAGAAGAACAAAATGGGGTCTCCGATCACCCTGGCATATCCGCCGTCATCCCCGGTTGGTTCTCCGAAATCAGCCCAATGTGGCCTGGGGAGGCGCACTCCTTGAAGGTGGAAAAGATTCTGTTTCAAGGGAAGTCTGAGTATCAGAATGTCATGGTTTTTCAGTCGTCAACATATGGCAAGGTTCTTGTTCTGGATGGGGTTATTCAGCTCACTGAAAGGGACGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTCTGCTCGATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTATCACGACATTCCTCAGTAGAGAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCCGATATAGCAGTAGGTTTTGACGACCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTTTGAAGGCTGTTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTGTTTGAAAAGCCTTTTTTCGAGTCTGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCACATGCACATCATTGAGGACATTGTGGCTAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCATGGACCACGGTTCCTACATACCCAAGTGGTATGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTTCTGTTGATTTCAAGCATCCAGTGAATCCTATAGATGAGAATGATAGTCAGCAGTCAACAAGACCATTGAAATTTTACAACTCTGAGATTCATACAGCGGCTTTCTGTTTGCCGTCTTTTGCTAAGAGGGCGATTGGTTCTAAAGCAAATTGA 984 0.4533 MAAENVVESRDLPTKRQREEEEQNGVSDHPGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDIAVGFDDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQSTRPLKFYNSEIHTAAFCLPSFAKRAIGSKAN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00809 327 Gene3D Spermidine synthase, tetramerisation domain 31 89 IPR037163 -
Cca06g00809 327 PANTHER SPERMIDINE SYNTHASE-RELATED 1 327 - -
Cca06g00809 327 CDD AdoMet_MTases 115 226 - -
Cca06g00809 327 PIRSF Spermidine_synth 28 327 IPR030668 GO:0006595
Cca06g00809 327 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 116 129 IPR030373 -
Cca06g00809 327 MobiDBLite consensus disorder prediction 9 26 - -
Cca06g00809 327 Gene3D Vaccinia Virus protein VP39 90 327 IPR029063 -
Cca06g00809 327 TIGRFAM speE: spermidine synthase 39 317 IPR001045 GO:0003824
Cca06g00809 327 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 322 IPR029063 -
Cca06g00809 327 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 327 IPR001045 GO:0003824
Cca06g00809 327 Pfam Spermidine synthase tetramerisation domain 38 92 IPR035246 -
Cca06g00809 327 Pfam Spermine/spermidine synthase domain 95 282 - -
Cca06g00809 327 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g00809 327 Hamap Polyamine aminopropyltransferase [speE]. 38 323 IPR001045 GO:0003824
Cca06g00809 327 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 37 274 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00809 Cca-Chr6 21087556 21090961 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00809 K00797 - gmx:100790506 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00809 06 21087556 21090961 Cca06g00809 06 21087556 21090961 ECH
Cca06g00809 06 21087556 21090961 Cca11g00667 11 11047064 11051556 PCT