Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00648 ATGGGTTTTGTTAAAACTATAATGTTGGTTATCTCATCATGTGTTTTGTTAGGGCTTTCCAATGCAGGTCCAACCACTGCATATAATAATGTGGTTAACTTTGGGGCAAAAGCAGATGGAAAAAGTGACTGTACAAAAGCATTCTTAAAGGCATGGGAATCAGCATGCACTAGTCAAAGTCCTGCGACTATTTACGTGCCTAAAGGGAGGTACCTGCTAAGAAACACCAATTTCCGAGGTCCATGCAAGAGGAAGGTCACATTCCAAATAGCTGGGACTCTTGTGGCTCCTGAAGATTACAGGGCACTAGGAAATTCTGGATATTGGATTTTATTCAATCATGTGGAGAATATTGTTGTTTCTGGAGGCAAATTGGATGCTAAAGGGGCTGCTTTCTGGAATTGCAGGAGATCTGGAAAGACTTGCCCCGTTGGAGCAAGGTCAATGACATTCAACTGGGTCAATAACTTGGTGGTTAGTGGCATAACTTCAGTGAACAGCCAGCTAGGTCACCTTGTGATCAACACTTGCAAGAATGTTGTTGTCAAAAATGTAAAGCTTATTGCACCAGACCAGAGCCCTAACACCGATGGCATTCATGTTGAACACTCAACTGGAGTTACTATTAATGGTTGTACCTTGCAAACTGGGGATGACTGCATATCCATCAGTGATGCCACCTCCAACCTCTTCATGTCCAACATTAAATGTGGCCCTGGCCATGGAGTAAGCATTGGAAGCTTGGGTAAAGAAATGGAGGAACAAGGAGTAGAAAATGTGACTCTAACCAACGCCATCTTCTCTGGATCTGACAATGGGGTGAGGATAAAGACTTGGGCCAGACCAAGCAAAGGGTTTGTTAGAAATGTTCGCTTCCAAAACATCATCATGGACAAAGTTGAGAATCCCATCATCATAGATCAAAATTATTGTCCCAACAATCAAGGTTGTCCAGGCCAGACTTCAGGAATTAAAATCAGCCAAATAACATATTCAAACATAAATGGAACTTCAGCAACACCAGAGGCAGTAACATTTGATTGCAGTCCAAGTAGCCCATGTCAAGGAATCAAATTACAGGATATAAACCTAAACTACAACGACAAAGCTGCAACCTCGTCTTGTAAGAACATTGAGGGGACCAGTAGTGGAACACTTGTGCCAGAAAGTTGTCTATAA 1179 0.4232 MGFVKTIMLVISSCVLLGLSNAGPTTAYNNVVNFGAKADGKSDCTKAFLKAWESACTSQSPATIYVPKGRYLLRNTNFRGPCKRKVTFQIAGTLVAPEDYRALGNSGYWILFNHVENIVVSGGKLDAKGAAFWNCRRSGKTCPVGARSMTFNWVNNLVVSGITSVNSQLGHLVINTCKNVVVKNVKLIAPDQSPNTDGIHVEHSTGVTINGCTLQTGDDCISISDATSNLFMSNIKCGPGHGVSIGSLGKEMEEQGVENVTLTNAIFSGSDNGVRIKTWARPSKGFVRNVRFQNIIMDKVENPIIIDQNYCPNNQGCPGQTSGIKISQITYSNINGTSATPEAVTFDCSPSSPCQGIKLQDINLNYNDKAATSSCKNIEGTSSGTLVPESCL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00648 392 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 21 391 - -
Cca11g00648 392 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Cca11g00648 392 Pfam Glycosyl hydrolases family 28 56 381 IPR000743 GO:0004650|GO:0005975
Cca11g00648 392 SMART pbh1 177 203 IPR006626 -
Cca11g00648 392 SMART pbh1 321 361 IPR006626 -
Cca11g00648 392 SMART pbh1 204 225 IPR006626 -
Cca11g00648 392 SMART pbh1 257 278 IPR006626 -
Cca11g00648 392 SMART pbh1 287 308 IPR006626 -
Cca11g00648 392 Gene3D - 19 390 IPR012334 -
Cca11g00648 392 SUPERFAMILY Pectin lyase-like 23 392 IPR011050 -
Cca11g00648 392 PANTHER - 21 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00648 Cca-Chr11 10576222 10577678 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00648 3 392 Glycoside Hydrolase AT2G43890 62.564 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00648 K01184 - gmx:100797183 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01952 07 46938633 46942521 Cca11g00648 11 10576222 10577678 PCT