Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01952 ATGGCTTTGCTGAACAAGAATACTCACCAGCTTCTTTCCAAGATTGCAACCAACGACAAGCATGGAGAGAATTCTCCTTATTTTGATGGGTGGAAGGCTTATAATTCAAACCCATTCCACCCCACAAAAAATCCTCAAGGTGTTATCCAGATGGGTCTTGCAGAAAACCAGCTATGCTTTGATCTGATTGAAGAATGGATAAGGAACAATCCCAAGGCCTCCATTTGCACTAAAGAAGGAGTGAACTGCTTCAAATATATTGCAAACTTTCAAGACTATCATGGATTGCCAGAGTTTAGAAAAGCTGTGGCAAATTTTATGTCAAAAGTGAGAGGTGGTAGGGTGAGATTTGATCCTGACCGTATATTGATGAGTGGAGGGGCCACAGGAGCGAACGAGCTAATCATGTTCTGTTTGGCTGATCCTGGAGATGCTTTTCTGGTTCCTAGCCCTTATTATCCAGCATTCGTCCGAGACTTGTGTTGGAGAACAAGGGCGCAACTAATTCCTGTGGAGTGTCACAGCAGCAACAACTTCAAGATAACAACAGAAGCTCTTGACGAAGCTTATAACAAAGCAAAAGAGGATAACATCAACGTGAAAGGGTTGATCATAACAAACCCATCAAACCCTTTGGGAACCACCATGGACAGGGAAACACTGAAGAGCATTGTTGGCTTCATCAATGAAAAAAACATCCATTTGGTGTGTGATGAAATCTATGCAGCCACAGTGTTTAGAGCACCTTCCTTCGTGAGTGTCTCTGAAGTCATGCATGAGATTGAACACTGCAACAGTGACCTCATTCACATTATTTATAGTTTGTCTAAGGACTTGGGGCTTCCGGGTTTTAGGGTTGGTATAGTTTATTCATACAATGATGGAGTGGTGAATAATGGGAGGAAAATGTCAAGCTTTGGACTAGTCTCATCTCAGACACAGCATTTTCTGGCTGCATTGCTTTCTGATGAGAATTTTGTGGAGAGGTTTCTGGCAGAGAGTTCAAGAAGGTTGGCTGCAAGGCACAGCCACTTCACAAAGGGACTTGAGAAGGTTAACATTACTTGCTTGCCAAGCAATGCAGGGCTTTTCTGTTGGATGAACTTGAGGAGTTTGCTGAAGGAGAAAACATTTGAAGGGGAAATGATGCAGTGGCGTTTGATCATCAATGAAGTGAAGCTTAATGTGTCACCAGGGTCATCTTTTGATTGCTCTGAGCCTGGTTGGTATAGGGTGTGTTTTGCTAACATGGATGATGAGACTGTGGATGTTGCACTCAAGAGGATCAGGGCATTTGTTGGGAAAGAGACAGGGAAACCAGTGGAACTCAAACGTTGCAAAAGTAACCTTAGACTCAGCTTCTCTTCGAGAAGATTTGACGAGAATGTTATGTCACCTCACATGATGTCACCCCATTCACCAATGCCTCACTCACCCCTTGTCAGAGCCACTTAA 1455 0.4337 MALLNKNTHQLLSKIATNDKHGENSPYFDGWKAYNSNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIRNNPKASICTKEGVNCFKYIANFQDYHGLPEFRKAVANFMSKVRGGRVRFDPDRILMSGGATGANELIMFCLADPGDAFLVPSPYYPAFVRDLCWRTRAQLIPVECHSSNNFKITTEALDEAYNKAKEDNINVKGLIITNPSNPLGTTMDRETLKSIVGFINEKNIHLVCDEIYAATVFRAPSFVSVSEVMHEIEHCNSDLIHIIYSLSKDLGLPGFRVGIVYSYNDGVVNNGRKMSSFGLVSSQTQHFLAALLSDENFVERFLAESSRRLAARHSHFTKGLEKVNITCLPSNAGLFCWMNLRSLLKEKTFEGEMMQWRLIINEVKLNVSPGSSFDCSEPGWYRVCFANMDDETVDVALKRIRAFVGKETGKPVELKRCKSNLRLSFSSRRFDENVMSPHMMSPHSPMPHSPLVRAT 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Cca07g01952 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Cca07g01952 484 Gene3D - 71 323 IPR015421 GO:0003824
Cca07g01952 484 Pfam Aminotransferase class I and II 49 429 IPR004839 GO:0009058|GO:0030170
Cca07g01952 484 SUPERFAMILY PLP-dependent transferases 17 434 IPR015424 -
Cca07g01952 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cca07g01952 484 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 8 450 - -
Cca07g01952 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 8 450 - -
Cca07g01952 484 MobiDBLite consensus disorder prediction 464 484 - -
Cca07g01952 484 Gene3D Aspartate Aminotransferase, domain 1 37 428 IPR015422 GO:0003824
Cca07g01952 484 CDD AAT_like 89 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01952 Cca-Chr7 46938633 46942521 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01952 K20772 - gmx:100775969 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01952 07 46938633 46942521 Cca07g01952 07 46938633 46942521 ECH
Cca07g01952 07 46938633 46942521 Cca11g00648 11 10576222 10577678 PCT