Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00578 ATGGCAAATACTAGATCTTGGACTCAGATATGGCCATCTTTTGTCACTCTATGTGTTCTAAATCTTGTCTTGGATTTCAAAATCACAGCATTTGCTGATGGCAGTGGAAGTGGAGGTGTAACTTCAGAAAACACTTGCAAGAACACAAATTATCAAAGTTTCCTCCCTCCACCGTACCAGAATATATCCCATATGATATGCACACCTGTATGGCATACCTATGAATTGAGGTACATCCAGAATGGTGAAACCACAACTATCATATTATCTGCTCCGTACACTATAGGGTGGGTAGGAATTGGATTTTCTAGAGATGGTATGATGGTTGGTTCAAGTGCAATGGTGGGGTGGATTAGTAAACATGGTCATGCAAGAATCAAGCAATTTTACCTAAGGGGTAGGAAGCCATCAGAAGTCATAGTAGACAAAGGTGAACTTCCCCTCAGTAATGTCCCTGCGGCTGTGGCAACTAATGGGGCTCAAATTCATTTGGCATTTCAGTTGCAGATGACAACCTCATTTGAGAAACAACCAATTTTGTTGGCTTTTGGCAGTAAATATCCACAGAACCATCATCTCTCCAAGCATGAAGACAAAACAGCTATTGTCTTTGATTTTTCTGCAGGTTCTACGAGTCCGGTATCCCATGAATCGATTCAGATGAGAACGAACCATGGAATTTTGGGTATAATTGGGTGGGGTCTAATCCTGCCTGTAGGAGCAATTATTGCAAGATATTTCAGGCACAAGGATCCCATATGGTTCTATCTCCATGCAGTCATTCAGTTTGTGGGATTCACATTTGGGCTTGGTACAGTAATTCTTGGATTACAACTATATTCTAAAATGCATGCTCATCTACCAGCTCACAGAGGCATAGGCATCTTTGCCCTGGTACTAAGTATTCTTCAGATATTGGCACTCTTCTTGAGACCAAAGAAGGATTCCAAGATTCGAAAAATTTGGAATTGGTACCACAGTTGGTTTGGAAGATTGGCTCTTATATTTGCAGCCATTAACATATTGTTGGGGATGCAAGCTGCGGGGGCAGGAAGTGATTGGAAGATAGGCTACGGATTCCTTGTTGGTGTTATGGTTGTTGCAGCCATTGTTCTTGAAGTATTGGCTTATTTGAAGAGATCAGAGATGCGTTCTCTACCTCCAAACTTCCAAATGGACCCTGTTGGAGCAGATACATTTCCAAGGGGGATATGA 1215 0.4181 MANTRSWTQIWPSFVTLCVLNLVLDFKITAFADGSGSGGVTSENTCKNTNYQSFLPPPYQNISHMICTPVWHTYELRYIQNGETTTIILSAPYTIGWVGIGFSRDGMMVGSSAMVGWISKHGHARIKQFYLRGRKPSEVIVDKGELPLSNVPAAVATNGAQIHLAFQLQMTTSFEKQPILLAFGSKYPQNHHLSKHEDKTAIVFDFSAGSTSPVSHESIQMRTNHGILGIIGWGLILPVGAIIARYFRHKDPIWFYLHAVIQFVGFTFGLGTVILGLQLYSKMHAHLPAHRGIGIFALVLSILQILALFLRPKKDSKIRKIWNWYHSWFGRLALIFAAINILLGMQAAGAGSDWKIGYGFLVGVMVVAAIVLEVLAYLKRSEMRSLPPNFQMDPVGADTFPRGI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00578 404 SMART 561_7 224 345 IPR006593 -
Cca11g00578 404 CDD DOMON_DOH 73 201 IPR045266 -
Cca11g00578 404 Gene3D - 200 385 - -
Cca11g00578 404 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 14 393 - -
Cca11g00578 404 Pfam Eukaryotic cytochrome b561 225 346 IPR006593 -
Cca11g00578 404 ProSiteProfiles Cytochrome b561 domain profile. 187 381 IPR006593 -
Cca11g00578 404 CDD Cyt_b561_FRRS1_like 204 374 - -
Cca11g00578 404 Pfam DOMON domain 77 138 - -
Cca11g00578 404 ProSiteProfiles DOMON domain profile. 72 184 IPR005018 -
Cca11g00578 404 PANTHER MEMBRANE PROTEIN-LIKE 14 393 - -
Cca11g00578 404 SMART DOMON_3 97 184 IPR005018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00578 Cca-Chr11 9131462 9134306 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00578 - - gmx:100807608 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00578 11 9131462 9134306 Cca11g00578 11 9131462 9134306 ECH
Cca03g03150 03 52917349 52919846 Cca11g00578 11 9131462 9134306 PCT