Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03150 ATGGCAAAGCCAAGATCTTGGACTCAGATATGGCCTTCTATTGTCAGATCGTGTATTCTGAATGTTGTTCTGAACTTCAACATCGTAGCATTAGCAGATGACACTGGAAGTAGCAGTATTGTATCAGAAGGTAACTGCAAGAACACAAATTATCAGATTTTCCTCCCTCCACCGTATCAGAATATATCCTCTACCATATGCAAACCTGTTTGGCACTCATACGAATTGAGGTACACTAAAACGGGTGATACCACAACTATCATATTGTCTGCTCCCTACACTGTTGGGTGGGTGGGAATTGGATTTTCTAGGGATGGTATGATGGCTGGTTCGAGTGCAATGGTGGGATGGATTAACAAACATGGTCATGCAAAAGTGAAGCAGTTTTATCTAAGGGGTAGGAGGCAATCAGAAGTAATTGTAGACAAAGGTGAACTGCCTCTAAGTAATGTGCCTGCAGCCGTGGCAACAAATGGGGCTGAAATTTACATAGCTTTTCAGCTGCAAACGACTATTCCATTTGGAAAGCAACCGATTCTATTGGCTTTCAGTACTAAACATCCACAGAACCACCATTTGTCAAAACATGTTGACAAAACAGCAGTTATATTTGATTTTTCTTCAGGTTCTACGGGTCCGGTATCTAATGGGTTGATTCAGATGAGGAAGAGCCATGGAATAGTGGGTATAATAGGGTGGGGCCTAATCCTGCCTGTGGGGGCAATTATTGCTAGGTACTTCAGGCATAAGGATCCCCTATGGTTCTATCTCCATTCGGTCATTCAATTTGTGGGATTTGCATTTGGGCTTGGCACGGTCCTTCTTGGTTTACAACTCTATAGAAAAACGCATGTGCACATTCCAGCTCACAGAGGCATAGGCATCTTTGTCCTTGTCCTAAGTATTCTTCAGATATTGGCATTCTTCTTGAGGCCAGACAAGGATTCCAAGATTCGAAACATTTGGAATTTGTATCACAGTTGGTTTGGAAGAATGGCACTTTTCTTTGCAGCCTTGAATATAGTGTTGGGGATGCGAGCTGCTGGGGCAGGGAATGATTGGAAGATAGGCTATGGATTCCTTGTTAGCATTATACTTGTGGCAGTTATCGTTCTCGAAGTATTGGCGTATTTGAAAAAATCAGAAAAGCGTTCGCTTCCTCAGACTTACCAAATGGACTCAGTTGGAGACGCTACCTTTCCAACCAATCTAGCTAAAGGGTAA 1224 0.4273 MAKPRSWTQIWPSIVRSCILNVVLNFNIVALADDTGSSSIVSEGNCKNTNYQIFLPPPYQNISSTICKPVWHSYELRYTKTGDTTTIILSAPYTVGWVGIGFSRDGMMAGSSAMVGWINKHGHAKVKQFYLRGRRQSEVIVDKGELPLSNVPAAVATNGAEIYIAFQLQTTIPFGKQPILLAFSTKHPQNHHLSKHVDKTAVIFDFSSGSTGPVSNGLIQMRKSHGIVGIIGWGLILPVGAIIARYFRHKDPLWFYLHSVIQFVGFAFGLGTVLLGLQLYRKTHVHIPAHRGIGIFVLVLSILQILAFFLRPDKDSKIRNIWNLYHSWFGRMALFFAALNIVLGMRAAGAGNDWKIGYGFLVSIILVAVIVLEVLAYLKKSEKRSLPQTYQMDSVGDATFPTNLAKG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03150 407 Pfam DOMON domain 76 144 - -
Cca03g03150 407 CDD DOMON_DOH 74 139 IPR045266 -
Cca03g03150 407 ProSiteProfiles Cytochrome b561 domain profile. 187 381 IPR006593 -
Cca03g03150 407 Pfam Eukaryotic cytochrome b561 242 346 IPR006593 -
Cca03g03150 407 ProSiteProfiles DOMON domain profile. 72 186 IPR005018 -
Cca03g03150 407 SMART DOMON_3 97 184 IPR005018 -
Cca03g03150 407 PANTHER MEMBRANE PROTEIN-LIKE 14 393 - -
Cca03g03150 407 CDD Cyt_b561_FRRS1_like 204 374 - -
Cca03g03150 407 Gene3D - 200 386 - -
Cca03g03150 407 SMART 561_7 224 345 IPR006593 -
Cca03g03150 407 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 14 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03150 Cca-Chr3 52917349 52919846 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03150 - - ccaj:109797335 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03150 03 52917349 52919846 Cca03g03150 03 52917349 52919846 ECH
Cca03g03150 03 52917349 52919846 Cca11g00578 11 9131462 9134306 PCT