Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00573 atggaactgaaactaaaactcataacccctttactctcttccctggtggccctgttcctatgcatctccgccacttccactgaaacccaaacccttcctctccgcaccctcccccacccacccacactctcatggcccgaatccgacaccacaggacccgacccggaacccttctccctccacctccaccacatggacgcactctccctcaacaaaaccccatcacaactattccacctaaggctccaacgcgacgccaaaagagtcaaaaccctatcgttcctcgccgcagcaaaccaaacccgacccgcagggtcagtcgggtcgggtttcgcaagctcgataatctcgggtcttgctcagggtagcggcgagtacttcacgcgcctaggcgtgggaactccaccaaagtacgtgtacatggttctcgacacaggaagcgacgtcgtctggctccaatgcgctccctgcgcaaaatgctactcacaaaccgacccggtttttgacccgctaaagtccAAATCTTTCGCCGGAATCCCATGTGGGTCCCCCCTATGCCGCCGTCTGGACTCGCCGGGGTGCAGCCGGAAAAAGGGTCTTTGTCAGTACCAAGTTTCGTACGGCGACGGGTCTTTCACGTTCGGAGATTTCTCCACCGAAACGTTGACGTTCCGACGCGCGCAGATCCCGCGCGTGGCGTTGGGATGCGGCCACGACAACGAGGGCCTCTTCGTGGGCGCCGCAGGTTTGTTGGGCCTGGGCCGCGGCGGGCTGTCGTTTCCGGTCCAGGCAGGATCCCGGTTCAACAACAAATTCTCTTACTGCCTAACGGACCGAACCGCTTCCGCCAAACCCTCTTCATTAGTCTTCGGCGACTCGGCCGTTTCGCGAACCGCCCGGTTCACTCCCCTGATAAAAAACCCAAAACTAGACACGTTCTATTACCTGGAGCTTCTGGGTATGAGCGTTGGCGGCGCCCCGGTTCGCGGCATTTCGGGTTCGCTCTTTCGGGTCGGCTCGAGCGGGGACGGTGGGGTGATAATTGACTCGGGGACTTCCGTGACGCGCCTCACGCGCCCTGCTTACGTGGCTCTGAGAGACGCGTTTCGGGTGAGGGCTTCGCATTTGAAGCGTGCGGCTGAGTTCGCGCTTTTCGACACGTGCTTTGATCTCTCGGGGCTGTCCGAGGTTAAGGTTCCGACCGTGGTGTTTCACTTCCGTGGTGCTGACGTGTCCCTTCCGGCGACGAATTATCTTATTCCGGTCGATAATAGTGGTACGTTCTGCTTTGCATTTGCCGGAACTATGAGTGGCTTGTCCATTATTGGAAACATTCAGCAGCAAGGCTTTCGGGTCGTCTTTGATTTGGCTGCTTCTCGGGTCGGGTTTGCCCCTAGAGGCTGCGCGTGA 1410 0.3702 MELKLKLITPLLSSLVALFLCISATSTETQTLPLRTLPHPPTLSWPESDTTGPDPEPFSLHLHHMDALSLNKTPSQLFHLRLQRDAKRVKTLSFLAAANQTRPAGSVGSGFASSIISGLAQGSGEYFTRLGVGTPPKYVYMVLDTGSDVVWLQCAPCAKCYSQTDPVFDPLKSKSFAGIPCGSPLCRRLDSPGCSRKKGLCQYQVSYGDGSFTFGDFSTETLTFRRAQIPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPVQAGSRFNNKFSYCLTDRTASAKPSSLVFGDSAVSRTARFTPLIKNPKLDTFYYLELLGMSVGGAPVRGISGSLFRVGSSGDGGVIIDSGTSVTRLTRPAYVALRDAFRVRASHLKRAAEFALFDTCFDLSGLSEVKVPTVVFHFRGADVSLPATNYLIPVDNSGTFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAASRVGFAPRGCA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00573 469 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 141 152 IPR001969 GO:0004190|GO:0006508
Cca11g00573 469 Pfam Xylanase inhibitor C-terminal 314 464 IPR032799 -
Cca11g00573 469 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 17 468 - -
Cca11g00573 469 Pfam Xylanase inhibitor N-terminal 126 292 IPR032861 -
Cca11g00573 469 MobiDBLite consensus disorder prediction 33 53 - -
Cca11g00573 469 ProSiteProfiles Peptidase family A1 domain profile. 126 464 IPR033121 -
Cca11g00573 469 CDD cnd41_like 125 468 IPR033873 -
Cca11g00573 469 SUPERFAMILY Acid proteases 119 468 IPR021109 -
Cca11g00573 469 PRINTS Pepsin (A1) aspartic protease family signature 132 152 IPR001461 GO:0004190|GO:0006508
Cca11g00573 469 PRINTS Pepsin (A1) aspartic protease family signature 346 357 IPR001461 GO:0004190|GO:0006508
Cca11g00573 469 PRINTS Pepsin (A1) aspartic protease family signature 440 455 IPR001461 GO:0004190|GO:0006508
Cca11g00573 469 MobiDBLite consensus disorder prediction 33 49 - -
Cca11g00573 469 Gene3D Acid Proteases 290 469 IPR021109 -
Cca11g00573 469 PANTHER ASPARTYL PROTEASES 17 468 IPR001461 GO:0004190|GO:0006508
Cca11g00573 469 Gene3D Acid Proteases 111 289 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00573 Cca-Chr11 9058230 9059985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00573 116 468 Miscellaneous Gene Families AT1G77480 28.497 8.11e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00573 K22683 - gmx:100791511 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00573 11 9058230 9059985 Cca11g00573 11 9058230 9059985 ECH
Cca03g03155 03 52957517 52958532 Cca11g00573 11 9058230 9059985 PCT