Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03155 atggtcctggacacgggaagcgacgtagtctggctccaatgcgccccttgccgcaaatgctactcccaaaccgacgccgttttcaaccccgccaaatccCGAACCTTCGCCGGAATCCCCTGCGGGGCCCCACTCTGCCGCAGGTTAGACTCCCCCGGTTGCAACAGGAACAAAATTTGCCAGTACCAGGTATCCTACGGAGACGGTTCTTTCACATTCGGTGACTTCTCCACCGAAACGCTCACGTTTCGTAAAACAAGAGTCACGCGCGTCGCTCTAGGTTGCGGCCACGACAACGAAGGTCTTTTTATTGGCGCTGCTGGCCTCTTGGGCCTGGGCCGGGGTAGCCTCTCATTTCCGGTTCAGACCGGACGCCGCTTCAACCAGAAATTCTCATACTGCCTCGTCGACCGTTCCGCCTCCGCCAAACCGTCTTCCGTCGTTTTCGGTGACTCCGCCCGTCGGTGGCACGCCCGTCCGCGGCCTCTCCTCCTCGCTCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACTCCGGCACCTCCGTCACGCGGTTGACGCGCCCTGCCTACATCGCCCTGCGCGACGCCTTCCGCGTTGGCGCCGCCCGCCTGAAGCGCGCGCCGGAGTTCTCCCTCTTCGACACGTGCTTCGACCTGTCAGGGCTGACGGAGGTGAAGGTGCCGACGGTGGTGCTGCATTTCCGCGGCGCCGACGTGTCTCTCCCGGCGACGAATTACTTGATTCCGGTGGACAACAGTGGGAGCTTCTGCTTCGCTTTCGCGGGAACCATGAGCGGGTTGTCCATAATTGGTAACATCCAGCAGCAAGGGTTCCGGGTGGTGTACGACCTCGCGGGTTCTCGGGTCGGGTTTGCCCCGAGAGGTTGCGTTTGA 933 0.5134 MVLDTGSDVVWLQCAPCRKCYSQTDAVFNPAKSRTFAGIPCGAPLCRRLDSPGCNRNKICQYQVSYGDGSFTFGDFSTETLTFRKTRVTRVALGCGHDNEGLFIGAAGLLGLGRGSLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSARRWHARPRPLLLALXXXXXXXXXXXXXXXXXXXXXXDSGTSVTRLTRPAYIALRDAFRVGAARLKRAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAPRGCV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03155 310 Pfam Xylanase inhibitor C-terminal 190 305 IPR032799 -
Cca03g03155 310 Gene3D Acid Proteases 1 151 IPR021109 -
Cca03g03155 310 Gene3D Acid Proteases 185 310 IPR021109 -
Cca03g03155 310 Coils Coil 167 167 - -
Cca03g03155 310 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 1 12 IPR001969 GO:0004190|GO:0006508
Cca03g03155 310 ProSiteProfiles Peptidase family A1 domain profile. 1 305 IPR033121 -
Cca03g03155 310 Pfam Xylanase inhibitor N-terminal 1 151 IPR032861 -
Cca03g03155 310 PANTHER ASPARTYL PROTEASES 1 163 IPR001461 GO:0004190|GO:0006508
Cca03g03155 310 SUPERFAMILY Acid proteases 1 309 IPR021109 -
Cca03g03155 310 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 1 163 - -
Cca03g03155 310 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 189 309 - -
Cca03g03155 310 PANTHER ASPARTYL PROTEASES 189 309 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03155 Cca-Chr3 52957517 52958532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03155 3 309 Miscellaneous Gene Families AT1G77480 25.926 1.39e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03155 K22683 - gmx:100794269 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03155 03 52957517 52958532 Cca03g03155 03 52957517 52958532 ECH
Cca03g03155 03 52957517 52958532 Cca11g00573 11 9058230 9059985 PCT