Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00555 ATGGAAAGAAAGCAGGAGAACATGGAGTTTGAGGACTTGTTGCCAGTGATGGCAGAGAAGCTTGATGTGGAGTCCTTTGTGTCAGAACTTTGTGGAGGATTCAGGCTTCTATCAGACCCACAAACAGGTTTGATCACAAGTGAGAGTTTAAGGAGAAACTCGGCTCTTCTTGGCATGGAAGAGATGAGCAAGGAGGATGCAGAGGCTATGGTTAGACAAGGTGATCTTGATGGCGATGGAAAGCTAAATGAAACTGAGTTTTGCATCCTCATGGTGAGGCTTAGCCCTGGAATGATGGAAGATGCTGAGGCATGGCTAGAGAAGGCAATTGATGAAGAACTTAGGAAATCCTCAAGTTAG 360 0.4556 MERKQENMEFEDLLPVMAEKLDVESFVSELCGGFRLLSDPQTGLITSESLRRNSALLGMEEMSKEDAEAMVRQGDLDGDGKLNETEFCILMVRLSPGMMEDAEAWLEKAIDEELRKSSS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00555 119 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Cca11g00555 119 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Cca11g00555 119 PANTHER CALCIUM-BINDING PROTEIN KIC 4 116 - -
Cca11g00555 119 PANTHER CALCIUM-BINDING PROTEIN KIC 4 116 IPR044205 GO:0005509
Cca11g00555 119 SUPERFAMILY EF-hand 15 116 IPR011992 -
Cca11g00555 119 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Cca11g00555 119 Gene3D - 7 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00555 Cca-Chr11 8557627 8558356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00555 9 114 EF-hand Containing Proteins AT2G46600 74.528 9.21e-56 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00555 K24345 - gmx:100802677 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00555 11 8557627 8558356 Cca11g00555 11 8557627 8558356 ECH
Cca03g03171 03 53142933 53143692 Cca11g00555 11 8557627 8558356 PCT