Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03171 ATGGAAGGCAAAGGCAAGCAATCCAAGAAAGAGAGGACGATGGAAGCAGAGTTCGAGGACTTGCTGCCTGTGATGGCAGAGAAGCTGGATGTGGAGACCTTTGTGTCTGAGCTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCAGAAACGGGTTTGATCACTAGTGAGAGTCTGATGAGGAATTCAGCTCTGTTGGGTATTGATGAAATGAGCAAAGAGGATGCAGAGGCCATGGTTAGACAGGGTGATCTTGATGGGGATGGAAAGCTCAATGAGACTGAGTTTTGCATCCTTATGGTCAGGCTTAGCCCTGGAATCATGGATGATGCTGAGACATGGCTTCACAAAGCACTTGAACAAGAGCTCACCAAATCCTCCTCTTAA 384 0.4844 MEGKGKQSKKERTMEAEFEDLLPVMAEKLDVETFVSELCGGFKLLADPETGLITSESLMRNSALLGIDEMSKEDAEAMVRQGDLDGDGKLNETEFCILMVRLSPGIMDDAETWLHKALEQELTKSSS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03171 127 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Cca03g03171 127 PANTHER CALCIUM-BINDING PROTEIN KIC 7 124 IPR044205 GO:0005509
Cca03g03171 127 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Cca03g03171 127 Gene3D - 15 127 - -
Cca03g03171 127 PANTHER CALCIUM-BINDING PROTEIN KIC 7 124 - -
Cca03g03171 127 Pfam EF-hand domain pair 49 101 IPR002048 GO:0005509
Cca03g03171 127 SUPERFAMILY EF-hand 32 111 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03171 Cca-Chr3 53142933 53143692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03171 14 126 EF-hand Containing Proteins AT2G46600 72.566 6.43e-57 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03171 K24345 - gmx:100787197 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03171 03 53142933 53143692 Cca03g03171 03 53142933 53143692 ECH
Cca03g03171 03 53142933 53143692 Cca11g00555 11 8557627 8558356 PCT