Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00548 ATGACTCGTTACAACCTTATATTCCTGGTTACCCTCAGTGTGGTCGTTTGTTTCACGATTCGGTGGTTGTTGTTCAAGACGGGGTTGATACACGCCGTGAAGAAACTCGCGAGAAGGTTTCAAGATTGGTTCCACGTGTACCAGTTCCTCAAAGTCCCCGAATTCAACGAAGGCATGCAGCGGAATCAGCTTTACCACAGAGTTTCTCTCTATTTGCATTCTCTTCCTTCCATCCAAGACGCTGACTACACCAATCTCATTACCGGTTCCAACCAAAACGACATCGTTTTGCGCCTCGACCCCAACCAAACCATACAAGACACTTTCCTCGGAGCCACGCTATTCTGGTTCAACCAAAAAACCCAACCCGACCGGATTTCATATTCTTTCGTTCTCAAAATAAGAAAAAACGACAAACGCCGAATCCTCCACCCCTATCTCCGCCACATCCACGCCGTCGCCGACGAGATGGAGAACAAAGGGAAGCGCCATTTGCGCTTGTACATGAACGCCGCTGCGGGTGCCGCCCAAACGCGGTGGAGATCGGTTCCGTTCACTCATCCGGCGACTTTCGAGACCATGGCGATGGAGAAGGATCTGAAGAACAAGATAAAGTCGGATCTGGAATCGTTCCTCAAGGCGAGGCAGTATTACCGGAAACTCGGCCGCGCGTGGAAGCGGAGCTTCCTCCTGTACGGTCCCTCCGGCACCGGAAAATCGAGTTTCGTGGCGGCGATGGCGAACTTCCTCCACTACGACGTGTACGACGTGGACCTCTCGCGGATTCACGGCGATTCGGATCTGAAGTTCCTCCTCATGGAAACGACGGCGAAGTCGATCGTGGTGGTGGAGAATCTGGACCGCTTCCTGGAAGCGGAATCGTCGCCGGCGGTGAGCGCCACGGGAATCCAGAGCTTCATGGACGGGATTCTGAGCGCGTGTTGCGGCGAGGAGAGGGTCATGGTGTTCACCATGAACAGCAAGGAGAGCGCCGACCCGAGACTGATTCGGCCGGGTCGGGTCGACGTGCACATTCACTTTCCGGTGTGCGATTTCTCGGCGTTCAAGACGCTGGCGAGTAGCTACCTCGGCCTGAAGGATCACAAGCTGTTCGCGCGGGTGGAGGAGATTTTCCGCCTCGGCGCGAGTCTCAGCCACGCCGAGATCGGCGAGTTGATGATCGCCAACCGGAACTCGCCGAGTCGGGCCATAAAATCGGTAATCGGGGCCCTGCAAACGGACGGTGATGGGAGAAGGTTTGGGTACGCGATCGGACGGCAGATAGAGTGTGATGACGTGGACGAAAGGGCGCTTTGTGATGGGGACGGCTTCCCTACGGTTAAGGATTCGCGCAAGTTTTACAGTTTCTTCAAGTTGCGCAACGCCAGAAGAACTCAACAAAAGTCCGATTCCTTGGCCCATGAAAGATAA 1431 0.5479 MTRYNLIFLVTLSVVVCFTIRWLLFKTGLIHAVKKLARRFQDWFHVYQFLKVPEFNEGMQRNQLYHRVSLYLHSLPSIQDADYTNLITGSNQNDIVLRLDPNQTIQDTFLGATLFWFNQKTQPDRISYSFVLKIRKNDKRRILHPYLRHIHAVADEMENKGKRHLRLYMNAAAGAAQTRWRSVPFTHPATFETMAMEKDLKNKIKSDLESFLKARQYYRKLGRAWKRSFLLYGPSGTGKSSFVAAMANFLHYDVYDVDLSRIHGDSDLKFLLMETTAKSIVVVENLDRFLEAESSPAVSATGIQSFMDGILSACCGEERVMVFTMNSKESADPRLIRPGRVDVHIHFPVCDFSAFKTLASSYLGLKDHKLFARVEEIFRLGASLSHAEIGELMIANRNSPSRAIKSVIGALQTDGDGRRFGYAIGRQIECDDVDERALCDGDGFPTVKDSRKFYSFFKLRNARRTQQKSDSLAHER 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00548 476 PANTHER BNAC04G00800D PROTEIN 7 441 - -
Cca11g00548 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 406 IPR027417 -
Cca11g00548 476 Gene3D - 181 349 IPR027417 -
Cca11g00548 476 CDD AAA 226 348 - -
Cca11g00548 476 Pfam Domain associated at C-terminal with AAA 28 117 IPR025753 -
Cca11g00548 476 Pfam ATPase family associated with various cellular activities (AAA) 230 348 IPR003959 GO:0005524|GO:0016887
Cca11g00548 476 SMART AAA_5 225 351 IPR003593 -
Cca11g00548 476 PANTHER BCS1 AAA-TYPE ATPASE 7 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00548 Cca-Chr11 8479047 8480921 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00548 - K08900 gmx:100787809 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00548 11 8479047 8480921 Cca11g00548 11 8479047 8480921 ECH
Cca11g00548 11 8479047 8480921 Cca03g03176 03 53180561 53182013 ECH
Cca03g03176 03 53180561 53182013 Cca11g00548 11 8479047 8480921 PCT