Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03176 ATGATTATGATAGTGGGAATGGGAACCCTGGCGGCCGCCTTCCTTTTGTTAACGCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTCCGAACCAAGAAGCTGTGGGAAGATTGGTTCCACGTGTACCACTTCCTCAAAGTCCCAGAAACTGCCACTCCGCCAATCTCGTAACGGGAAAGAATCAAAACGACATCGTCCTCTCCCTCGCCCCCAACCAAACCATCCAGGACCACTTTCTCGGAGCCACGCTCTTCTGGTCCAACCTAACCCACACCCCAACCCCAACCTTCCTTCTCAAAATCAGAAAGCTCGACAAGCCCCGAATCCTTCGCCCCTACCTTCAACACATTCACACCGTCGCCGACCAAATCCACCACCAAGGGAACCGCCATTTGCGCCTCTTCATCAACAACGCCCACCACTTCGGACGCTGGAGATCCCTTCCCTTCACGCATCCTTCCACCTTCCACACCATCGCCATGGAACCGGATCTCAAGAACCGACTCAAATCCGATCTCCAATCCTTCCTCAGAGCCAAACAATACTACCACCGCCTCGGCCGCGTCTGGAAGCGGAGCTTCCTCCTCTATGGTGCCTCCGGCACCGGAAAATCCAGCTTCGTCGCCGCCATGGCCAATTTCCTCTCCTACGACGTCTACGACATCGACCTCTGCAAAATCCCTAGCGACTCAGATCTGAAACTCCTCCTCCTCCACACCACGCCGAAATCGGTGGTGGTGATCGAAGACCTGGACCGGTTCCTGGCGGACAAAACGTCTAGAGTGAGCGCGTCCGGGATACTGAACTTCATGGATGGGATTCTCACCTCGTGTTGCGCTGAAGAGAGAGTGATGGTGTTCACGATGAACACGAAGGAACATGTTGACCCGAACCTTCTTCGGCCGGGTCGGATCGACGTGCATATCCATTTTCCTCTTTGTGATTTTTCGGCGTTCAAAACGCTTGCGAGTAGTTACCTTGGTGTGAAGGAGCACAAGTTGTTCCCTCAGGTGCAGGAGATTTTCCAAAACGGTGCCAGTTTGAGTCCCGCTGAAATCGGTGAGTTGATGATCGCCAACCGAAACTCGCCGAGTCGGGCTATTAAATCCGTTATTACGGCTTTGCAAACGGACGGTGACGGCCGAGGGTGCGGCTTGATCGGACGGCAGACAGAGGATGGTGATGATGAGTTGGATGAGCCTAATGGAGTTGTGTGCGGTGAGGGTCTCCACACGGTTAAGGATTTGCGCAAATTGTACGGTTTTTTCCGCTTCAGAGTTACCAGAAGATCTTCGTCGTCCATTGCTTCCTTACCGGCGAGCCCATTGCGATAG 1371 0.5142 MIMIVGMGTLAAAFLLLTLXXXXXXXXXXXXXXXXXXXXXLPNQEAVGRLVPRVPLPQSPRNCHSANLVTGKNQNDIVLSLAPNQTIQDHFLGATLFWSNLTHTPTPTFLLKIRKLDKPRILRPYLQHIHTVADQIHHQGNRHLRLFINNAHHFGRWRSLPFTHPSTFHTIAMEPDLKNRLKSDLQSFLRAKQYYHRLGRVWKRSFLLYGASGTGKSSFVAAMANFLSYDVYDIDLCKIPSDSDLKLLLLHTTPKSVVVIEDLDRFLADKTSRVSASGILNFMDGILTSCCAEERVMVFTMNTKEHVDPNLLRPGRIDVHIHFPLCDFSAFKTLASSYLGVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGLIGRQTEDGDDELDEPNGVVCGEGLHTVKDLRKLYGFFRFRVTRRSSSSIASLPASPLR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03176 456 Pfam ATPase family associated with various cellular activities (AAA) 207 325 IPR003959 GO:0005524|GO:0016887
Cca03g03176 456 PANTHER BNAC04G00800D PROTEIN 65 410 - -
Cca03g03176 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 386 IPR027417 -
Cca03g03176 456 SMART AAA_5 202 327 IPR003593 -
Cca03g03176 456 CDD AAA 203 325 - -
Cca03g03176 456 Gene3D - 322 387 - -
Cca03g03176 456 PANTHER BCS1 AAA-TYPE ATPASE 65 410 - -
Cca03g03176 456 Coils Coil 19 19 - -
Cca03g03176 456 Gene3D - 160 321 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03176 Cca-Chr3 53180561 53182013 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03176 - K08900 gmx:100805212 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03176 03 53180561 53182013 Cca03g03176 03 53180561 53182013 ECH
Cca11g00548 11 8479047 8480921 Cca03g03176 03 53180561 53182013 ECH
Cca03g03176 03 53180561 53182013 Cca11g00548 11 8479047 8480921 PCT