Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00365 ATGGAACAACAAGAGGGAGACACGTGGACAATGCCGCCGTTCTGGGCGGCGGAGCACCGGGACCGCCGCCGTCTCCGCCGctcttactctctgctactcacctccacctccctcctcttactcttcctcgtactggtcctcgtcttctcgctcatcctagtccCCACGTTGCACTCCTTCGCCTCCAACATCCTAAGACCTCGTACGGTTAAGAACAGTTGGGACTCCCTAAACCTCGTACTCGTTCTCTTCGCCATCGTTTGCGGCTTCCTCGGAAGAAACAACGCCAACGAAACTGTAACACCACGTTCCCATTACCACAATCACAGAACCTTCTCCAATCCTTCCACGCCGCCACCGCACTGCTATCACTACAACCACTCTCACACTCCTTATCGTTCCTTTAACAGGCTCAGGAGCTTCAACTCCTACCCCGATCTCCGCCAACAGATTGCCGGAGAAGAACGCTTCCGCTTCTACGATGACACCTTCCTCCTCCGCCACCACCCTCAAGACGGAGAAATAAAAGAAATGGTAATTGAGCACGTTGCCACCGCTCCGCCGCAATCGCCGCCGTCGCAAGCTGTTCGAAGAAATGTCATGCCAGCGTCTCAAGTGGAAACCATTCAGAAGCACGAAGAAACCGATATAGACGGGAAGATTTCACCACCGCGGTCGTCGGCGGCGACACGACCGAAAAGTGTTCGTCGAAATTTCAATCGAGCGTATCAAGTGGAAGCAATCGAGAAACATGAAACAAATGATTTACCTGCGATGGATTCACCGCAGCCGTCGCCGCCGTCGACGAGAACAAAAGGTGTTCGACGACGAAGTGCATACCGAACAAATCACGCGGAAACCATCGAGAAACGGAAAACAAACGATCTAGATTTGGAAAATTCACAATCACCGCCGTCGCCGCCGTCTGCGACGCAAACGAAAGATGTACGACGAAGTGTCAATCCGGAAAGAAATGATATGGTTGTGAAGAGTTCACCGCTGTCGCCACCTTCGCTGCCGGCGGAGGTGAAGACGGTGACGGGTAAGAAGAAAAGAGGGATTGGTACTAAGGAGTTCTTGACATCTTTAAGAGGGAAGAAGAAAAAACAAAGACAAAGAAGCGTTGAAAATTTTGATAGCATTCTACTTGTCGAACCATTGTTTCCACAACCGCCACCGCCGCCTCCCCCACCACCTAGGGTTTTTCAGAACCTATTTTCTTTGAAGAAAGGGAAACACAAAAATAGCCACTCTGTTTCTGTAGCAACAGCAAGCGTATCAAACAAGAAGGAGAATTCCTCCTATAATGTGATGACAACCGGTAATGAGTCACCATTGATTCCTATTCCTCCACCACCACCGCCGCCGCCGTTCAAGTTGCCGGCGTGGAAGTTCCGGGTGAAGGGTGACTATGTTAGGGTAGACAGCATTGGTAGTTCACGAAGTGGGTCACCTGATCTGGATGAAGCTAGTGTGGACACACCAACAACTAGTACTCATGATGAAACAAGCCAATGTAATAGTCCTTTTGCCAGAGATGGTGAAGATTCTGCAAGTGTGAGTGCACCCTCGTTGTTCTGTCCTAGCCCTGATGTTGATACCAAGGCTCACAACTTCATTGAGAGCTTCAGGGCTGGTTTGAGGATGGCCAAGATGAACTCCATGAAGGAGAGGCAGGGGATTGGGAGGTCCAATCTTGGCCCTTCACCTAACCATGAATGGTGA 1725 0.4823 MEQQEGDTWTMPPFWAAEHRDRRRLRRSYSLLLTSTSLLLLFLVLVLVFSLILVPTLHSFASNILRPRTVKNSWDSLNLVLVLFAIVCGFLGRNNANETVTPRSHYHNHRTFSNPSTPPPHCYHYNHSHTPYRSFNRLRSFNSYPDLRQQIAGEERFRFYDDTFLLRHHPQDGEIKEMVIEHVATAPPQSPPSQAVRRNVMPASQVETIQKHEETDIDGKISPPRSSAATRPKSVRRNFNRAYQVEAIEKHETNDLPAMDSPQPSPPSTRTKGVRRRSAYRTNHAETIEKRKTNDLDLENSQSPPSPPSATQTKDVRRSVNPERNDMVVKSSPLSPPSLPAEVKTVTGKKKRGIGTKEFLTSLRGKKKKQRQRSVENFDSILLVEPLFPQPPPPPPPPPRVFQNLFSLKKGKHKNSHSVSVATASVSNKKENSSYNVMTTGNESPLIPIPPPPPPPPFKLPAWKFRVKGDYVRVDSIGSSRSGSPDLDEASVDTPTTSTHDETSQCNSPFARDGEDSASVSAPSLFCPSPDVDTKAHNFIESFRAGLRMAKMNSMKERQGIGRSNLGPSPNHEW 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00365 574 PANTHER COTTON FIBER (DUF761) 1 124 - -
Cca11g00365 574 PANTHER COTTON FIBER (DUF761) 131 570 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 250 350 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 298 316 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 476 528 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 209 238 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 558 574 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 555 574 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 279 297 - -
Cca11g00365 574 MobiDBLite consensus disorder prediction 477 514 - -
Cca11g00365 574 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 131 570 - -
Cca11g00365 574 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00365 Cca-Chr11 4767877 4770024 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00365 - - gmx:100799093 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00295 10 3183049 3184504 Cca11g00365 11 4767877 4770024 PCT