Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00295 ATGAACCAAAGCAATCGTGTTGGAGAATTAAAAACACCGTTTTCGTCCACACCAACTTGGAAAACACGTTACGTCTCAAACCAAATGGAGGAGGAAGAAGATGCGTCGCCACCCTTCTGGACGGAAAACGGGGGCGGGCGCCGCCGCCTCCGCCGTTCCTACTCCCTGTTCCTCAGCTCCGGGGCACTTCTGATATGCATTCTGGTGATCGCACTTGCATTCACGTTGGTCATCATTCCCACGTTGCACTCTTTCGCCACAAACATTTTGAAACCCAATTCGGTGAAGAAGAGTTGGGACTCTCTCAACTTGCTTCTTATCCTCTTCGCCATTCTCTGCGGCTTCCTCGGCAAGAACACCGGCGAAGGCTTCTCCGACACGCCACACGATCGTATAACAGGCTCAGGAGCTTCAACTCCTACCCGGATCTCCGCCAAGACTCGCCGTGGCTTGCCGCCGATGAACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCGATGAACGGTGGCGGTTTTACGACGACACGCACATCAACGGTTATAAGGTCGGAGAAGAAGAGAGTGACACGAACGTACAGGTGGTGAAGAAGGAAGTTCCGCCGCCAACGCCAGCTCCGGCGGAGAGGAGGAGCGAGCAAAAGAAGAATAAGAGAACAAGTGCAACTAAAGAGTTGTTGACATCTTTGAAGGGAAAGAAGAAGAAACAAAGACAAGGAAGCGTTGAAAATGTTAAGAGCATTTCTTCGTTACATCCTCAAACTTCCTCAGTTATTCATAATATGTTTCCTTCAAAGAAAAGCGAGAACAAGAAACTAAACTCTGCTTTGTCGCCGCATGTTTCATTATCCAAAACCGAACCGGTTCATGGGGGTGTGACTACTATCGTTGCATCAAACAAGAGAGAGGATTTCTATGGCATGGAAGAAAATCTGGTCGATACTGGTAACGAGTCGCCTTTGATCCCAATACCTCCGCCACCGCCACCACCGCCGTTCACGATGCCGGCGTGGAAGTTTCGGGTGCAGGGTGACTTTGTTAGAATAGATAGCATTAGTAGTTCGAGTAGTGGTTCGCCGGATGTAGAAGATCAAGTTGTGGAGTCACCAAGAAGTGAAGATGGTGAAGAATCTGGAATCTTGTTGGTTTATCCTAACCCTGATGTTGATACCAATGCTGATACTTTTATTGAAAGGTTCAGATCCGGTTTAAGAATGGAGGAGAAGCAGGGGATTGGTACGTCCAATCTACGCCCTTCTACAAAACCGAAAGCTGGACCAAGTGGAGTTTAA 1389 0.4456 MNQSNRVGELKTPFSSTPTWKTRYVSNQMEEEEDASPPFWTENGGGRRRLRRSYSLFLSSGALLICILVIALAFTLVIIPTLHSFATNILKPNSVKKSWDSLNLLLILFAILCGFLGKNTGEGFSDTPHDRITGSGASTPTRISAKTRRGLPPMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADERWRFYDDTHINGYKVGEEESDTNVQVVKKEVPPPTPAPAERRSEQKKNKRTSATKELLTSLKGKKKKQRQGSVENVKSISSLHPQTSSVIHNMFPSKKSENKKLNSALSPHVSLSKTEPVHGGVTTIVASNKREDFYGMEENLVDTGNESPLIPIPPPPPPPPFTMPAWKFRVQGDFVRIDSISSSSSGSPDVEDQVVESPRSEDGEESGILLVYPNPDVDTNADTFIERFRSGLRMEEKQGIGTSNLRPSTKPKAGPSGV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00295 462 MobiDBLite consensus disorder prediction 131 145 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 241 273 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 126 153 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 214 318 - -
Cca10g00295 462 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 230 452 - -
Cca10g00295 462 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 29 128 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 381 395 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 274 314 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 352 368 - -
Cca10g00295 462 PANTHER COTTON FIBER (DUF761) 230 452 - -
Cca10g00295 462 PANTHER COTTON FIBER (DUF761) 29 128 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 381 462 - -
Cca10g00295 462 Coils Coil 154 155 - -
Cca10g00295 462 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00295 Cca-Chr10 3183049 3184504 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00295 - - ccaj:109806555 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00295 10 3183049 3184504 Cca11g00365 11 4767877 4770024 PCT