Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00325 ATGACTGATAGGGTTCACCCTGCCGCCAAAACCACCACCCCAAAGCCAACATTCCCCGCCGCACAATCCAACCTTCCCGGCGCCACCCGCCTCTCCTACCGCCCCCAACCGCCTCACCGTCGCCGCAGCAGAAGCGGCTGCAGCCTCTGCTGTTGGctcctcctgatcctcctcttcctcctcctcctcctGGGCGGCGGCGCCACCGTCTTCTACTTCCTCTACCACCCCCAACGCCCCACCTTCTCCCTCACCTCTCTCAAACTCACCACCTTCAACCTCACCTCTCCCTCCACCCTCGACGCAAAGTTCCACCTCGCCCTCTCCACCACAAACCCTAACCCTAAAATCCTCTTCTCCTACGACGCCACCTCCGTCTCCATCCTCTGCGGCGATACCGCCCTCGCCGCCGCCACCATCCCCGCCTTCCGCCAACCCCAGAGGAACACCACCGTGCTAGAGGCCACCGTCGCGAGCACCGAAGACGCGGTGGCGCAGCTGAAGAGGAGCAAGAGCGAGGTGGCTCTGAAGGTGGAGTTGGAGACCAAGGTGGCGGCCGAGACGGGGGTGCTGACGACGCCGCGCGTCGGAGTGAGAGTTTTGTGCGACGGCATCGGCGTTTCCCTACCCGACGGCGAGAAACCGGCGACGGCGATAACTGAGAATACGGAATGCGAAGTGGATGTGCGGTTGAAGGTGTGGAAATGGACCATTGGATGA 720 0.6014 MTDRVHPAAKTTTPKPTFPAAQSNLPGATRLSYRPQPPHRRRSRSGCSLCCWLLLILLFLLLLLGGGATVFYFLYHPQRPTFSLTSLKLTTFNLTSPSTLDAKFHLALSTTNPNPKILFSYDATSVSILCGDTALAAATIPAFRQPQRNTTVLEATVASTEDAVAQLKRSKSEVALKVELETKVAAETGVLTTPRVGVRVLCDGIGVSLPDGEKPATAITENTECEVDVRLKVWKWTIG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00325 239 Gene3D - 73 199 - -
Cca11g00325 239 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 9 237 - -
Cca11g00325 239 Pfam Late embryogenesis abundant protein 108 200 IPR004864 -
Cca11g00325 239 MobiDBLite consensus disorder prediction 15 30 - -
Cca11g00325 239 PANTHER CHAPERONIN CPN60-LIKE PROTEIN 9 237 - -
Cca11g00325 239 MobiDBLite consensus disorder prediction 1 44 - -
Cca11g00325 239 SUPERFAMILY LEA14-like 55 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00325 Cca-Chr11 4236674 4237858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00325 33 224 EF-hand Containing Proteins AT5G21130 25.592 2.66e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00325 - - ccaj:109806872 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00263 10 2871740 2873633 Cca11g00325 11 4236674 4237858 PCT