Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00323 ATGGCTTCAGTTTGTGCAATCAAATTCTTGCTGTGTTTAGTTTTATGGCTCTGCAACTCTCTACCTCCTTGTCAAGGAAAGCAGAAGTGGCATGAAAACAGATACCCTTTTATCAGAAATGCAAGCTCATTCTCATCACCATCAATTTCAACTACCTCCACCAATAATGCTTATGACTATATTATAGTGGGAGGTGGCACAGCAGGGTGTCCTTTGGCTGCAACCCTATCTCAGAACTTCAGTGTTCTGGTGCTTGAAAGAGGGGGTGTTCCTTTCACCAACCCCAATGTCTCATTTCTAGAAAACTTCCACATTACCTTGGCAGATATTTCTCCAACTTCAGCTTCTCAATACTTCATTTCAACTGATGGAGTCTACAATTCAAGGGCAAGGGTCTTGGGAGGTGGCAGTTCCATCAATGCTGGCTTCTACTCTAGAGCAAATCCAGGGTTTATAAAGAAGGTGGGTTGGGATGCGAACCTAGTAAACCAGTCATACCCTTGGGTTGAGAAGCAAATTGTTCACCGTCCAACGTTTTCAGCTTATCAGAGAGCAGTGAGGGACAGTCTTCTAGATACTGGCGTGTCGCCTTTTAATGGCTTCACCTACGATCATGTCTATGGAACAAAGGTTGGTGGAACCATTTTTGACAGATTCGGCCGCCCCCACACGGCTGCTGAACTGCTTGCCTCAGGGAACCGTGACAAGCTAACTGTTTTGATCTATGCCACTGTCCAAAAGATTGTGTTTGATACAAGAGGAAAGAGGCGAAAGGCTGTGGGGGTTATTTTCCAGGATGAAAATGGGAAACAGCATGAGGCTACTCTGACAAATGATGGGCATAGTGAAGTTATAATGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTAATGCTTAGTGGAATTGGGCCAAAAGAAGAACTCCAGAAGTTGAACATCTCAGTGGTCCTTAACAACCGATTTGTTGGGAAAGGAATGGTAGACAATCCCATGAATACAATGTATGTTCCTTCTAATAGACCAATTAATCAGTCACTCATAGAAACAGTTGGTATCACTAATATGGGTGTGTACATTGAGGCTAGCAGTGGGTTTGGTCAGTCCAATGAAAGCATTCACTGCCACCATGGTATCATGTCAGCTGAGATTGGGCAGCTGTCAACAATTCCTCCTAAGCAAAGATCACAAGAAGCTATTCAAGCCTATATCAAGAACAAGCGAGACATACCGGTTGAAGCATTCAAGGGAGGCTTTATTCTGTCAAAAGTTGCCAACCCTTGGTCGGTAGGTGAGCTCAGGCTGATCAACACCAATGTGAATGACAACCCTGCTGTTACCTTCAACTACTTCAGCCATCCATATGATCTTCAGCGCTGCGTTAAGGGGATCCGCATGGCCATTAAGGTAGTCCAGTCACCATACTTCACAAACTACACTTTGAGTGACAGAAAAACCAGAGAGAAACTGCTCAACCTCACTGTCAAGGCTAATGTCAACTTAATACCCAAGCATCCCAATGACACTAAGTCAATTGAGCAGTTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGTTGCCACGTGGGGAAGGTTGTCAGCCCTGACTATAAGGTTCTCGGTGTTGACAGACTCCGTGTGGTAGATGGCTCAACATTTAATGAATCACCAGGAACAAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTTTGAGAGATAGGTTGGGGAAATTAGCTGGTATATAA 1770 0.4458 MASVCAIKFLLCLVLWLCNSLPPCQGKQKWHENRYPFIRNASSFSSPSISTTSTNNAYDYIIVGGGTAGCPLAATLSQNFSVLVLERGGVPFTNPNVSFLENFHITLADISPTSASQYFISTDGVYNSRARVLGGGSSINAGFYSRANPGFIKKVGWDANLVNQSYPWVEKQIVHRPTFSAYQRAVRDSLLDTGVSPFNGFTYDHVYGTKVGGTIFDRFGRPHTAAELLASGNRDKLTVLIYATVQKIVFDTRGKRRKAVGVIFQDENGKQHEATLTNDGHSEVIMSSGAIGTPQLLMLSGIGPKEELQKLNISVVLNNRFVGKGMVDNPMNTMYVPSNRPINQSLIETVGITNMGVYIEASSGFGQSNESIHCHHGIMSAEIGQLSTIPPKQRSQEAIQAYIKNKRDIPVEAFKGGFILSKVANPWSVGELRLINTNVNDNPAVTFNYFSHPYDLQRCVKGIRMAIKVVQSPYFTNYTLSDRKTREKLLNLTVKANVNLIPKHPNDTKSIEQFCKDTVITIWHYHGGCHVGKVVSPDYKVLGVDRLRVVDGSTFNESPGTNPQATVMMMGRYMGLKILRDRLGKLAGI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00323 589 Pfam GMC oxidoreductase 231 330 IPR000172 GO:0016614|GO:0050660
Cca11g00323 589 Pfam GMC oxidoreductase 58 152 IPR000172 GO:0016614|GO:0050660
Cca11g00323 589 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 589 - -
Cca11g00323 589 SUPERFAMILY FAD/NAD(P)-binding domain 51 581 IPR036188 -
Cca11g00323 589 Coils Coil 589 589 - -
Cca11g00323 589 PIRSF Alcohol_oxidase 39 588 IPR012132 GO:0050660
Cca11g00323 589 Gene3D - 58 571 IPR036188 -
Cca11g00323 589 Pfam GMC oxidoreductase 426 572 IPR007867 GO:0016614
Cca11g00323 589 ProSitePatterns GMC oxidoreductases signature 2. 289 303 IPR000172 GO:0016614|GO:0050660
Cca11g00323 589 PANTHER OSJNBA0019K04.7 PROTEIN 2 589 - -
Cca11g00323 589 Gene3D - 175 521 - -
Cca11g00323 589 SUPERFAMILY FAD-linked reductases, C-terminal domain 326 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00323 Cca-Chr11 4200905 4208903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00323 58 582 Miscellaneous Gene Families AT5G51950 51.698 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00323 K15403 - gmx:100788704 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00261 10 2841898 2852184 Cca11g00323 11 4200905 4208903 PCT