Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00322 ATGGCAAATAGTGATAGTTGTTGTTCAACTCAGCTTATCGATGGGGATGGTACATTCAATGTTTCTGGGATTGAAAAATTCATGAAGGAGGTGAAATTGGCTGAATGCGGGCTTTCATACGCTGTAGTTTCTATAATGGGTCCTCAAAGTAGTGGCAAGAGCACGCTATTAAATAATTTGTTTGGCACCAACTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTAATGGCATAGAGCCTTGTACACTTGTGATGGATTTAGAGGGTACAGATGGAAGAGAACGTGGCGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCGGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCTCAGGCCCACAAGGAAACCCCACTAAGTGAATTTTTCAACGTTGAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCTAGCTTGCGACAACGATTCCATCATTCTATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGCTCTGAGCAAATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGTTGTGAAGAAATTGCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTATTCCTGGATTTGGGAAAAAGCTCAATTCACTCCTTGATACTTATTTATCGGAGTATGATGCTGAAGCCACCTATTTTGATGAAGGTGTGAGATCATCCAAACAAAAGCAACTACAAGAAAAATTGTTCCAACTTGTCCAACCAGCATTCCAATCTGCGCTGGGACATGTAAGATCTGGAACTTTGGATAAATTCAAGGAGGCATTTGACAAGGCTTTGAATAGAGGGGAAGGGTTTTCTGTGGCTGCTAATAATTGCATTGAGTCTTGTATGGCTCAATTTGATGAAGCTTGTGCAGATGTTGTTATTGAACAAACAAACTGGGATACCACTAAAGTACGAGAAAAACTGCGGCGTGATGTTGATGCACATGTTGCAACTGTACGTGCAACCATGATTTCTGAACTTACTTCAAAATATGAGGAAAAACTTAAAACAGCTTTGTCTGGACCTGTCGAAGCTCTTTTGGATGGAGCTAATAGTGAAACTTGGCCATCAATAAGGAACCTTCTTAGACGTGAGGCTCAATCAGCTGTTTCAGAGTTCTCTGCTGCTCTTGATGGGTTTGATATGGACGAAGAAACACGGCAGAAAATGATTTTGAGTTTAGAGGATCATGCAAGGGGTCTAGTAGAAGGAAAGGCCAAGGAAGAAGCTGGAAGAGTTCTAATCCGCATGAAGGACAGGTTTACGACGTTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGAAAGGAAGATATTCGAGCCATCACCAAGACTGCTCGCTCTGCTTCTTTGAAGTTGCTAGCTGTTATGGCTGCAGTTCGTTTGGATGATGATGACACTGACAATATTGAAAAAGTATTATCAGTTGCATTGGTGGATTCACCATCAGGCAGTGCTGCTACAAAGAGCATCACAATGGTTGATCCACTAGCTTCTAGCAGCTGGGAACAGGTTTCATCCTCTAAAACACTGATTACACCTGTCCAGTGCAAGTCTTTGTGGAGGCAGTTCAAGACAGAGACAGAGTACAGTGTGTCTCAGGCCATTTCTGCACAGGAGGCCAGCAAGCGCAACAACAATTGGTTACCTCCCCCATGGGCAATAGTTGCTCTGGTTGTCCTTGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGCTATCTTCTCATTAAAGCCCTATGGGTGCAGCTTGATGTTTCGGGCGAATTCCGCAATGGAGCTCTTCCTGGAATCATATCCTTGTCTAGCAAGTTTCTTCCAACTATCATGAACATTATGAAAAAACTAGCAGAGGAGGGACAGAACACTACAGTTAACAATCCTCAGAGAACCCCATCAAAAAACAGTTACAATGACGGTCGTCGAGCTGCGCCATCTAGCGCATCATCTAACCTGACCTCATTGGACAACGGTGCTGAGCAGGAGAGTCCATTGAAAGATGACTAG 2430 0.428 MANSDSCCSTQLIDGDGTFNVSGIEKFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCNGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSFEEKEEQFREQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSSEQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYASFVANEDWCQLEEAVQSGPIPGFGKKLNSLLDTYLSEYDAEATYFDEGVRSSKQKQLQEKLFQLVQPAFQSALGHVRSGTLDKFKEAFDKALNRGEGFSVAANNCIESCMAQFDEACADVVIEQTNWDTTKVREKLRRDVDAHVATVRATMISELTSKYEEKLKTALSGPVEALLDGANSETWPSIRNLLRREAQSAVSEFSAALDGFDMDEETRQKMILSLEDHARGLVEGKAKEEAGRVLIRMKDRFTTLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLAVMAAVRLDDDDTDNIEKVLSVALVDSPSGSAATKSITMVDPLASSSWEQVSSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEASKRNNNWLPPPWAIVALVVLGFNEFMTLLRNPLYLGVIFVGYLLIKALWVQLDVSGEFRNGALPGIISLSSKFLPTIMNIMKKLAEEGQNTTVNNPQRTPSKNSYNDGRRAAPSSASSNLTSLDNGAEQESPLKDD 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00322 809 MobiDBLite consensus disorder prediction 761 801 - -
Cca11g00322 809 CDD GBP 36 239 - -
Cca11g00322 809 Coils Coil 218 238 - -
Cca11g00322 809 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 3 779 - -
Cca11g00322 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 276 IPR027417 -
Cca11g00322 809 Gene3D - 14 246 IPR027417 -
Cca11g00322 809 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Cca11g00322 809 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Cca11g00322 809 MobiDBLite consensus disorder prediction 761 809 - -
Cca11g00322 809 PANTHER PROTEIN SEY1 3 779 IPR008803 -
Cca11g00322 809 Hamap Protein SEY1 [SEY1]. 9 762 IPR008803 -
Cca11g00322 809 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00322 Cca-Chr11 4176599 4186509 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00322 K22698 - gmx:100777656 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00259 10 2815341 2824054 Cca11g00322 11 4176599 4186509 PCT