Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00259 ATGACGATGAACGACCATTGTTGCTCCACTCAGCTTATTGATGGAGATGGTTGTTTCAATGTTATTGGGATTGAAAGCTTCATGAAGGAGGTTAAATTAGGCGAATGTGGGCTTTCATACGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGAAAGAGCACGTTGTTAAATAGTTTGTTTCGTACCAACTTCAGAGAGATGGATGCGTTTAAGGGAAGGTCGCAAACAACCAAAGGAATTTGGATGGCTAAATGTGTCGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAAGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCTGTTTCTGATATTGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCAGCGAATAAGCCGCTATTAAAAACTGTGTTTCAGGTTATGATGAGATTGTTTTCTCCACGCAAAACAACATTGCTGTTTGTCATACGTGACAAGACAAAGACACCACTTGAAAACTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCAGAGGCCCATAAAGAAACCCCATTAAGTGAATTTTTCAATGTTGAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTTCCAACTTGAGGCAACGATTCCATCATTCTATAGCTCCAGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCAGCTTCAGGATTTTCTTTTAGTGCTCAGGAAATCTGGAGAGTCATTAAGGAGAACAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACCGTAAGATGTGAAGAAATTGCTAATGAGAAATATGACCTTTTTGCTGCAAATAAGGACTGGTGTGAGTTGGAAGAGGCTGTGAAATCTGGCCCTATTTCTGGATTTGGGAAAAAGCTCAATTCTCTCCTTACCACTTATCTTTCAGAGTATGATGCTGAAGCCGCTTTTTTTGACGAAGGTGTGAGATCTTCAAAACAAAAGCAACTTCAGGAAAAACTGTTACAACTTGTCCAACCAGCATACCAAATTGCGCTGGGACATATAAGGTCCGGAGTTTTGGATAAGTTCAAGGAAACATTAGAGAAGGTTTTGAGTGGAGGCGAAGGGTTTTCATCTGCTGCTAACAAGTGCGTAGAGTCCTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTGTTGAAGTAGCAAACTGGGATACATCTAAAGTGAGGGAGAAGCTACGGCGTGATATTGATGCACATGTCGTATCTGTTCGTGCATCTAAGATGGCAGAACTTGTTTCATCATACGAGGAAAAACTGAAGGAGGCCTTGTCTGCACCTGTTGAAACACTATTGGATGGAGCTAATAATGATACTTGGCCATCGATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGCCGAACTTACCAGATTTGATTTGGATGAACAAACACACAATAACATGATTGTGAGTTTACAGGATTATGCAAAGGGTGTGATAGAAGCCAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATGCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATATTCGAGGCATCACCAAGTCTGCCCGCTCTGCATGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGTTTGGTTGATGCGGATGACACTTACGATATCGAGAATACTTTAACAGTTGCATTGGCTGATTCATCAAGTAGTTCTGTTAACACTAAGAGCATCACAGCAGTTGATCCACTGGCTTCAAGCACTTGGGAGCAGGTACCATCCTCTAAAACATTGATCACACCTGTCCAGTGCAAATCTTTATGGAGGCAATTCAAGATGGAGACAGAATATAGTGTTTCTCAGGCCATTTCTGCACAGGAAGCTAACAATCGTAACAGCAACTGGTTACCTCCACCATGGGCGATTGCTGCTTTGCTCATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAATGGTCATATTCGTTGGCTATCTTCTCATTAAAGCCCTGTGGACGCAGCTTGACATCTCGGGTGAATTTCGCAATGGAGCTCTTCCAGGAATCATCTCCTTGTCTACAAAGTTAGTTCCAACTATCATGAACCTTATGAAAAAACTAGCTGAGGAGGGACAGAGCCCTGCAACAAACGAACGTCGGAGAAATTCATCAAGACGCAGTCGAAGAGAAGTTCCTGATGGTAGTATTACGTCATCTAGTGCTTCTTCTAGTGTAACTTCGTTGGGTAAAGGAGCCGAGTTTACCAGTCCATCAAAAAATGAGTAG 2439 0.4219 MTMNDHCCSTQLIDGDGCFNVIGIESFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNSLFRTNFREMDAFKGRSQTTKGIWMAKCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSEFFNVEVVALSSFEEKEEQFKEQVSNLRQRFHHSIAPGGLAGDRRGVVPASGFSFSAQEIWRVIKENKDLDLPAHKVMVATVRCEEIANEKYDLFAANKDWCELEEAVKSGPISGFGKKLNSLLTTYLSEYDAEAAFFDEGVRSSKQKQLQEKLLQLVQPAYQIALGHIRSGVLDKFKETLEKVLSGGEGFSSAANKCVESYMAQFDEGCADVVVEVANWDTSKVREKLRRDIDAHVVSVRASKMAELVSSYEEKLKEALSAPVETLLDGANNDTWPSIRKLLNRETQSAVSGFSAELTRFDLDEQTHNNMIVSLQDYAKGVIEAKAREEAGRVLIRMKDRFMTLFSHDADSMPRIWTGKEDIRGITKSARSACLKLLSVMAVIRLVDADDTYDIENTLTVALADSSSSSVNTKSITAVDPLASSTWEQVPSSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANNRNSNWLPPPWAIAALLILGFNEFMTLLRNPLYLMVIFVGYLLIKALWTQLDISGEFRNGALPGIISLSTKLVPTIMNLMKKLAEEGQSPATNERRRNSSRRSRREVPDGSITSSSASSSVTSLGKGAEFTSPSKNE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00259 812 Coils Coil 218 238 - -
Cca10g00259 812 MobiDBLite consensus disorder prediction 758 812 - -
Cca10g00259 812 MobiDBLite consensus disorder prediction 784 812 - -
Cca10g00259 812 Hamap Protein SEY1 [SEY1]. 9 766 IPR008803 -
Cca10g00259 812 PANTHER PROTEIN SEY1 7 795 IPR008803 -
Cca10g00259 812 MobiDBLite consensus disorder prediction 763 783 - -
Cca10g00259 812 Pfam Sey1 three-helix bundle domain 323 761 IPR046758 -
Cca10g00259 812 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Cca10g00259 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 246 IPR027417 -
Cca10g00259 812 Gene3D - 27 245 IPR027417 -
Cca10g00259 812 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 7 795 - -
Cca10g00259 812 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Cca10g00259 812 CDD GBP 36 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00259 Cca-Chr10 2815341 2824054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00259 K22698 - gmx:100797516 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00259 10 2815341 2824054 Cca11g00322 11 4176599 4186509 PCT