Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00318 ATGGGCTTAAACAAGCTCATGGAGTGGAATGTACCACTATTGTTTGTGGTGGTGTTTGCATGTTCATTGATTGGTCATGCTTCAGCTTCTGTGTCCTATGACCATAAGGCTATCACCATCAATGGACAAAGAAGGATACTGCTTTCTGGCTCCATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTCATTCAAACTTATGTTTTCTGGAATGGACACGAACCTTCACCTGGCAAATATTATTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTACGTTTGTGCTGAATGGAACTTCGGCGGTTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGCTTTAGAACAGACAATGGACCGTTTAAGTTTCAAATGCAAAAATTTACCAAGAAGATTGTCGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGTGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGGCCTATGGAGTATGAAATTGGTGCCCCTGGTAGAGCATATACTCAATGGGCAGCACATATGGCTGTAGAACTTGGCACTGGTGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTGTGATTAACGCTTGCAATGGCTTTTACTGTGATTATTTCTCTCCAAATAAGGCATACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGGCCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTTAATTATTATATGTACCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACCAGCTATGATTACGATGCTCCTCTTGATGAATATGGACTGCCCAGACAGCCAAAGTGGGGCCATTTGAAGGATTTACATAGAGCAATAAAACTCTGTGAACCTGCTTTAGTATCTGGAGATCCTACTGTACAGCGGCTTGGAAACTATGAAGAGGCTCATGTCTTCAAGTCAAAGTCTGGAGCTTGTGCCGCATTCCTTGCAAACTATAACCCACAATCTTATGCAACAGTGACATTTGGAAATCAGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAGGCACACTGTTTATAACACTGCAAGGGTTGGTTCCCAGAGCACACAGATGAAGATGACTCGTGTTCCTATTCATGGGGGTCTCTCTTGGAAAGCGTATAATGAAGAGACAACCACCACTGGTGACAGTTCCTTCACGGTGACTGGCCTGTTGGAGCAGATTAATGCAACCAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTGATCAATCCCAATGAAGGATTTTTGAGAAATGGAAAGAATCCTGTTCTTACAGTTTTGTCTGCTGGTCATGCTTTGCATGTTTTTATCAACAATCAGCTGTCAGGAACTGTATATGGAAGCTTAGAGTCCCCCAAGCTAACCTTTAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTCTAAGCGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTTGGCCCAATTACATTAAGTGGTCTCAATGAGGGGAAAAGGGACTTGACTTGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTTCATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGGTACTTAGTTTCCAGAAGGCAGCCATTGACCTGGTACAAAACTACCTTTGATGCCCCAGCTGGAGTTGCACCACTGGCTTTAGACATGGCCAGTATGGGAAAAGGTCAAGTGTGGATAAATGGACAAAGTCTGGGCCGCTACTGGCCTGCTTACAAAGCATCTGGTTCTTGTGGTTACTGTAACTATGCAGGAACATATAACGAAAAGAAATGCGCAAGTAACTGTGGCGAGGCTTCTCAAAGATGGTGA 2091 0.4405 MGLNKLMEWNVPLLFVVVFACSLIGHASASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRAYTQWAAHMAVELGTGVPWIMCKQDDAPDPVINACNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSIARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPRQPKWGHLKDLHRAIKLCEPALVSGDPTVQRLGNYEEAHVFKSKSGACAAFLANYNPQSYATVTFGNQHYNLPPWSISILPNCRHTVYNTARVGSQSTQMKMTRVPIHGGLSWKAYNEETTTTGDSSFTVTGLLEQINATRDLSDYLWYSTDVVINPNEGFLRNGKNPVLTVLSAGHALHVFINNQLSGTVYGSLESPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGKRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPAGVAPLALDMASMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCASNCGEASQRW 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00318 696 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Cca11g00318 696 Gene3D - 598 671 - -
Cca11g00318 696 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Cca11g00318 696 Gene3D - 455 588 - -
Cca11g00318 696 PANTHER BETA-GALACTOSIDASE 8 696 - -
Cca11g00318 696 SUPERFAMILY Galactose-binding domain-like 405 576 IPR008979 -
Cca11g00318 696 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Cca11g00318 696 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Cca11g00318 696 Gene3D Glycosidases 25 346 - -
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Cca11g00318 696 SUPERFAMILY Galactose-binding domain-like 585 665 IPR008979 -
Cca11g00318 696 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cca11g00318 696 PANTHER BETA-GALACTOSIDASE RELATED 8 696 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00318 Cca-Chr11 4093978 4101049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00318 11 696 Glycoside Hydrolase AT3G13750 81.195 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00318 - - gmx:100785688 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00318 11 4093978 4101049 Cca11g00318 11 4093978 4101049 ECH
Cca10g00256 10 2789800 2796013 Cca11g00318 11 4093978 4101049 PCT