Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00256 ATGACGGGCTTCAAGCTCATAATGTGGAATGTGTTACTGCTTGTGGCTTTTTCTCTCATTGCTTCTGCCAAGGCCTCAGTGTCCTATGACTCGAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGACGGAGGTTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGACACGAGCCCTCACCTGGCAAGTATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGCGCAGCAAGCAGGCCTTTATGTTAATCTCAGGATTGGTCCTTACGTCTGTGCTGAGTGGAACTTCGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCGGGAATCAGCTTCAGAACAGACAATGGTCCATTTAAGTATCAAATGCAAAAATTTACAACGAAGATCGTTGATTTGATGAAAGCCGAGAGGTTATTTGAGAATCAGGGAGGTCCAATAATTTTGTCCCAGATTGAAAATGAATATGGACCTATGGAGTACGAAATTGGTGCTCCGGGTAAATCTTACACTAAGTGGGCAGCAGATATGGCTATAGGACTTGGTACTGGAGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACTTGCAATGGCTTTTATTGTGATTATTTCTCTCCAAACAAAGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTCCTGTTCCTCATCGACCTGCTGAGGACTTGGCATTTTCAGTTGCAAGGTTTGTACAGAAAGGGGGATCATTTGTAAATTATTACATGTATCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACAAGCTATGATTATGATGCACCCCTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTCTGTGAACCAGCATTAGTATCGGGAGATCCTACTGTAACAAAGATTGGAAACTATCAAGAGGCCCATGTCTTTAAATCAAAGTCGGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCGAAATCTTATGCAACAGTGGCTTTTGGAAATATGCATTACAACTTACCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGAACACCGTTTATAACACTGCAAGGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTCGTGTTCCTATTCATGGTGGACTCTCTTGGCAATCATTCAACGAGGAAACGACCACTACCGATGATAGTTCCTTCACCATGACTGGCCTGTTGGAGCAGTTAAATACGACGAGAGATTTAACCGACTACTTGTGGTACTCCACAGAtgttgtGATTGATCCAAATGAAGGATTTCTGAGAAACGGAAATGATCCTGTTCTTACGGTGTTCTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAGCTAACAGGAACTGCATATGGAAGCTTGGAATTCCCTAAACTTACATTTAGCAAGGGAGTGAATCTCAGATCTGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTACCGAATGTTGGTCCTCATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATTTCATTAAATGGTCTCAACGAAGGGAGAAGGGACTTGACCTGGCAGAAATGGTCTTACAAGGTTGGTCTGAAAGGTGAACTCTTGAGTCTTCACTCTCTCAGTGGAGCTTCCTCAGTGGATTGGATTCGGGGATCTTTGGTTTCTCGAAGGCAGCCATTGACTTGGTACAAAACAACTTTTGATGCGCCAGCTGGGAGTGCACCATTGGCTTTAGACATGAACAGCATGGGCAAAGGTCAAGTGTGGTTAAATGGACAAAATCTTGGTCGCTACTGGCCTGCTTATAAAGCATCTGGTACCTGTGATTACTGTGATTATGCTGGAACTTATAATGAGAAAAAATGTACAAGTAACTGTGGCGAAGCTTCTCAAAGATGGTATCATGTTCCTCATTCATGGCTAAAGCCAACTGGAAATTTATTGGTTGTGTTTGAAGAGTTAGGTGGAGATCCAAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGATATTTATGAGTGGCAGCCAAATCTTGTAAGCTATCAGATGCAAACTTCAGGCAAAGTTAGCAAACCAGTGAGACCAAAAGTTCATTTATCATGTGGCCTTGGACAGAAAATCTCATCAATCAAATTTGCTAGTTTTGGTACTCCAGTAGGTTCTTGTGGAAACTTCCGTGAAGGAAGCTGTCACGCTCACAAGTCTTATGATGCCTTTCAAAGGAATTGTGTTGGACAGAACTGGTGCACAGTAACTGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAAGCTATTTGTTCCTGA 2523 0.4281 MTGFKLIMWNVLLLVAFSLIASAKASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKYQMQKFTTKIVDLMKAERLFENQGGPIILSQIENEYGPMEYEIGAPGKSYTKWAADMAIGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFVQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPTVTKIGNYQEAHVFKSKSGACAAFLANYNPKSYATVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQSAQMKMTRVPIHGGLSWQSFNEETTTTDDSSFTMTGLLEQLNTTRDLTDYLWYSTDVVIDPNEGFLRNGNDPVLTVFSAGHALHVFINGQLTGTAYGSLEFPKLTFSKGVNLRSGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLNGLNEGRRDLTWQKWSYKVGLKGELLSLHSLSGASSVDWIRGSLVSRRQPLTWYKTTFDAPAGSAPLALDMNSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNEKKCTSNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYQMQTSGKVSKPVRPKVHLSCGLGQKISSIKFASFGTPVGSCGNFREGSCHAHKSYDAFQRNCVGQNWCTVTVSPENFGGDPCPNVMKKLSVEAICS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00256 840 Gene3D Glycosidases 23 343 - -
Cca10g00256 840 Gene3D - 750 840 IPR043159 -
Cca10g00256 840 SUPERFAMILY Galactose-binding domain-like 581 748 IPR008979 -
Cca10g00256 840 Pfam Glycosyl hydrolases family 35 34 338 IPR031330 -
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 249 264 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 286 301 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 617 631 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PRINTS Glycosyl hydrolase family 35 signature 644 660 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 PANTHER BETA-GALACTOSIDASE RELATED 11 834 IPR001944 GO:0004553|GO:0005975
Cca10g00256 840 Pfam Galactose binding lectin domain 762 839 IPR000922 GO:0030246
Cca10g00256 840 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Cca10g00256 840 SUPERFAMILY Galactose-binding domain-like 401 572 IPR008979 -
Cca10g00256 840 PANTHER BETA-GALACTOSIDASE 11 834 - -
Cca10g00256 840 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Cca10g00256 840 SUPERFAMILY (Trans)glycosidases 27 343 IPR017853 -
Cca10g00256 840 ProSiteProfiles SUEL-type lectin domain profile. 754 840 IPR000922 GO:0030246
Cca10g00256 840 Gene3D - 609 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00256 Cca-Chr10 2789800 2796013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00256 10 840 Glycoside Hydrolase AT3G13750 81.227 0.0 1453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00256 - - gmx:100811187 1651.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00256 10 2789800 2796013 Cca10g00256 10 2789800 2796013 ECH
Cca10g00256 10 2789800 2796013 Cca11g00318 11 4093978 4101049 PCT