Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00300 ATGAACGGTCGTGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCGCAGGTTTTCGGGGAACGTACGGCGGGGGAAGAAGTTCAGGAAGTGGACATTATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTCGCTACCGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATCCTCGTGGATCAAGAAGGGATATGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGCTATAAAACAGAGTTTCAGAGTCACGAGCCAGAGTTTGACTATCTTAAGAGTTTGGAAATAGAAGAGAAAATTAACAAAATCAAGTGGTGCCAAACATCTAATGGTGCTTTGTTTCTTCTGTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAGTTTCTGACATGAATGTTGATCCTAAGGCAATGGGAAATGGCTCTATTGCAAGTTCAAGTAATTCCAGTAGCTCTAAATCATATCTTGCAAATGGAGTATCTCCGGATGGACCATACAATTATTTGAGCAAAGATTTCTCATTTCCACCAGGAGGCATACCTTCACTAAGATTACCATCGGTAGTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGACTATCATATTAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGATATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTACAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCCCCTGGATCCAGATCATTTTTTACAGAGATTATTGCTTCCATCTCAGACATAAAATTTGGGAAGGATGGGAGATACATACTTAGCCGTGATTACATGACCCTCAAGTTATGGGACATCAATATGGATTCTGGCCCAGTTTCTACATTCCAGGTTCACGAGTATTTGAGGCCAAAGCTTTGTGATTTATATGAAAATGATTCAATATTTGACAAGTTTGAGTGTTGTCTAAGCGGTGATGGATTGCGTGTTTCAACTGGGTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCGGGAAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCGATGAGACGCCAGGTTCCAACGCCTTCAAGGCCTTCTAGATCACTGGGAAACAGTTTAACAAGAGTCGTAAGACGCGGAGCAGAAAGTGCTGGCGTTGATGCGAATGGGAATTCATTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACAGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTGA 1548 0.4173 MNGRDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDPRGSRRDMERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTSNGALFLLSTNDKTIKFWKVQEKKVKKVSDMNVDPKAMGNGSIASSSNSSSSKSYLANGVSPDGPYNYLSKDFSFPPGGIPSLRLPSVVTSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLDISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSLTRVVRRGAESAGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00300 515 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 5 515 - -
Cca11g00300 515 SMART WD40_4 223 262 IPR001680 GO:0005515
Cca11g00300 515 SMART WD40_4 31 66 IPR001680 GO:0005515
Cca11g00300 515 SMART WD40_4 105 145 IPR001680 GO:0005515
Cca11g00300 515 SMART WD40_4 273 313 IPR001680 GO:0005515
Cca11g00300 515 SMART WD40_4 332 370 IPR001680 GO:0005515
Cca11g00300 515 MobiDBLite consensus disorder prediction 443 462 - -
Cca11g00300 515 PIRSF PPA2_B55 11 515 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 MobiDBLite consensus disorder prediction 165 182 - -
Cca11g00300 515 SUPERFAMILY WD40 repeat-like 39 507 IPR036322 GO:0005515
Cca11g00300 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Cca11g00300 515 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 5 515 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Cca11g00300 515 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Cca11g00300 515 Gene3D - 36 196 IPR015943 GO:0005515
Cca11g00300 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Cca11g00300 515 MobiDBLite consensus disorder prediction 158 182 - -
Cca11g00300 515 Gene3D - 208 509 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00300 Cca-Chr11 3781519 3791341 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00300 K04354 - gmx:100789058 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00300 11 3781519 3791341 Cca10g00244 10 2674736 2682470 ECH
Cca11g00300 11 3781519 3791341 Cca11g00300 11 3781519 3791341 ECH
Cca10g00244 10 2674736 2682470 Cca11g00300 11 3781519 3791341 PCT