Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00244 ATGAACGGTGGCGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCACCCTCTGGAGTGGAAATTCTCTCAGGTCTTCGGGGAGCGTACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTAATCATCTTGCTACCGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCCATTAGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTCAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTCTTCCTTCTTTCCACAAACGATAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGAAATGGATATATTGCTAGTTCAAGCAATTCAAGTAATTCTAGGCCATATCTAGCAAATGGAGGATCTCCAGATAGATCATATAATTATCCAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCTTCACTAAAATTACCCATGGTAGTTGTAAGTAGCCATGAAACCAGCTTAGTTGCTCGATGTCGTAGAGTGTATGCACATGCTCATGATTACCACATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTACGAATATGGAGGATCTGACAGCAGAATTTCACCCTACACATTGTAATATGTTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGATTTGCGACAATCAGCATTATGCGATTCTCATTCCAAACTATTTGAGGAACAAGAAGCTCCAGGGTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCTGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTCGAGTGTTGTCTGAGTGGAGATGGATTGCGTGTAGCAACTGGTTCTTACAGCAATCTATTTCGTGTGTTTGGTTGTGCCGCTGGAAGTGCTGAGGCTACAACTTTAGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACACCTTCAAGGCCCTCTAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAACCCCTGGTGTGGATGCTAATGGGAATTCTTTTGATTTCACCACGAAGTTGCTGCACTTAGCATGGCATCCAAGTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA 1539 0.41 MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGNHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGYIASSSNSSNSRPYLANGGSPDRSYNYPSNDFSFPPGGIPSLKLPMVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAAGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 424 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 481 510 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 316 343 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 372 397 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 344 371 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 236 263 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 SMART WD40_4 329 367 IPR001680 GO:0005515
Cca10g00244 512 SMART WD40_4 105 145 IPR001680 GO:0005515
Cca10g00244 512 SMART WD40_4 371 425 IPR001680 GO:0005515
Cca10g00244 512 SMART WD40_4 225 264 IPR001680 GO:0005515
Cca10g00244 512 SMART WD40_4 31 66 IPR001680 GO:0005515
Cca10g00244 512 Gene3D - 24 193 IPR015943 GO:0005515
Cca10g00244 512 Gene3D - 225 320 IPR015943 GO:0005515
Cca10g00244 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Cca10g00244 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 234 248 IPR018067 -
Cca10g00244 512 SUPERFAMILY WD40 repeat-like 39 504 IPR036322 GO:0005515
Cca10g00244 512 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Cca10g00244 512 MobiDBLite consensus disorder prediction 165 188 - -
Cca10g00244 512 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Cca10g00244 512 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 MobiDBLite consensus disorder prediction 440 459 - -
Cca10g00244 512 PIRSF PPA2_B55 12 512 IPR000009 GO:0000159|GO:0019888
Cca10g00244 512 Gene3D - 321 508 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00244 Cca-Chr10 2674736 2682470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00244 K04354 - gmx:100799449 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00300 11 3781519 3791341 Cca10g00244 10 2674736 2682470 ECH
Cca10g00244 10 2674736 2682470 Cca10g00244 10 2674736 2682470 ECH
Cca10g00244 10 2674736 2682470 Cca11g00300 11 3781519 3791341 PCT