Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00288 ATGCGTTACTTCAAATTCAAAGGGTTCCATTTGTTGATCTTTTTCCATGTCTTGGCTGCAACTCCAGTCTTCTCATCATCAGATTTCTCAAACCAACTCTCCACAAACTTTCTAGATATTGCCAAGAAGGCTGAAGTATTTGATTGGATGGTCAAAATCAGAAGGAAGATTCATGAGAATCCAGAATTGGGTTATCAGGAATTTGAGACAAGTAAACTCATTAGAGAGGAATTGGATAAACTTGGTATCCCCTATAAACACCCTGTTGCTGTCACTGGTGTTATTGGCTTCATTGGAACAGGAACCTCACCTTTTGTTGCAATAAGAGCTGATATGGATGCTCTTCCCATTCAGGAACTGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCACGCGTGTGGTCATGATGCTCATGTCACTATGCTTCTTGGTGCAGCAAAGATTCTTAAACAGCATGAGAAAGAGATTCAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGGGCAAAGAAAATTTTACTTGCTGGAGCCTTAGAGAATGTTAGTGCTATCTTTGGATTACATATGCTTCCTAACATTCCAGTAGGTAAAGTGGCCTCTAGGACTGGTCCAATAATGGCAGGAAGCGGTGTCTTTCAAGCTATAATAAGTGGAAAAGGAGGTCATGCAGCTATTCCCCAACAAACTATAGACCCTATATTGGCAGCTTCTAGTGTCATTCTTAGCTTACAACACCTTGTTTCTCGAGAGGCTGATCCTCTAGACCCCCAGGTTGTGACGGTTTCAATGTTCCACGGAGGTGATACATTCAATGTTATTCCAGATAATGTCACAATTGTTGGCACCTTCCGAGCTTTTGCTAGAAAAAGCATGGAGCAACTTAAACAGCGCATTGAGCAGGTTATCATTGGTCAAGCTGCTGTGCAGAGGTGCAATGCAACTGTCATCTTCCATGGTGAAGTGGAACCTTTCTATCCTCCAACTGTAAATAATGGTGACTTGCACAAGCTTTTTCAAAATGTTGCTGTAAATTTGCTTGGCACCGATAAGGTTAATGTTGACATGGCACCATTCATGGGAGCTGAAGACTTTTCATTCTATCAAGAGGTCATACCTGGCTACTTATTCATGCTTGGAATGGAGTATAATTCATCTGAACCGTTTCAGTCATTACACTCTCCCTATCTCAAAATCAATGAAGACGGACTTCCCTATGGTGCTGCACTGCATGCATCATTAGCTGCTACTTATCTTATAAACTATCAGCAGAATGTAACACAGTTAGGTTAA 1314 0.4193 MRYFKFKGFHLLIFFHVLAATPVFSSSDFSNQLSTNFLDIAKKAEVFDWMVKIRRKIHENPELGYQEFETSKLIREELDKLGIPYKHPVAVTGVIGFIGTGTSPFVAIRADMDALPIQELVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGAGAKKILLAGALENVSAIFGLHMLPNIPVGKVASRTGPIMAGSGVFQAIISGKGGHAAIPQQTIDPILAASSVILSLQHLVSREADPLDPQVVTVSMFHGGDTFNVIPDNVTIVGTFRAFARKSMEQLKQRIEQVIIGQAAVQRCNATVIFHGEVEPFYPPTVNNGDLHKLFQNVAVNLLGTDKVNVDMAPFMGAEDFSFYQEVIPGYLFMLGMEYNSSEPFQSLHSPYLKINEDGLPYGAALHASLAATYLINYQQNVTQLG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00288 437 TIGRFAM amidohydrolases: amidohydrolase 50 413 IPR017439 GO:0016787
Cca11g00288 437 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 322 IPR036264 -
Cca11g00288 437 Gene3D - 215 333 - -
Cca11g00288 437 SUPERFAMILY Zn-dependent exopeptidases 44 428 - -
Cca11g00288 437 PANTHER PEPTIDASE M20 FAMILY MEMBER 9 435 IPR017439 GO:0016787
Cca11g00288 437 PIRSF Amidohydrol_AmhX 36 429 IPR017439 GO:0016787
Cca11g00288 437 CDD M20_IAA_Hyd 50 426 IPR044757 GO:0009850|GO:0016787
Cca11g00288 437 Gene3D Zn peptidases 50 410 - -
Cca11g00288 437 PANTHER AUXIN CONJUGATE HYDROLASE 9 435 - -
Cca11g00288 437 Pfam Peptidase dimerisation domain 220 310 IPR011650 -
Cca11g00288 437 Pfam Peptidase family M20/M25/M40 107 422 IPR002933 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00288 Cca-Chr11 3624983 3629080 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00288 K21604 K14664 gmx:121172631 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00237 10 2610404 2618856 Cca11g00288 11 3624983 3629080 PCT