Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00237 ATGGGGTCTTTCTTCAAATGGATCAACTTGTTGGTCTTTTTTCATTTCCTTGCTGCAACAACCATCTTCACCTTCAGCTCAAATGCAATCGCCATCACCAAGTTTCTTGATTTAGCCAAGGATCCTCGGGTTTTTGATTGGATGGTGGGTATCCGGAGGAAGATTCACGAGAATCCAGAACTGGGTTATCAGGAATTTGAGACCAGTCAGCTTATAAGGGTGGAATTGGATAAACTGGGCATTTCATATAAATACCCTGTTTCAGTCACTGGTGTTATTGCCTTCATAGGGACTGGACACCCTCCTTTTGTTGCAATAAGAGCTGACATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGCGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGCTCATGTTGCCATGCTTCTTGGCGCTGCAAAGATCCTCAAAGAGCATGAAAATGAGATACAAGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGGGTCTTGGAAAATATCTCTGCCATATTCGGATTGCATGTCGCACCTAACTTAGCAATAGGTGAAGTGGCCTCTAGGTCGGGTCCTATATTTGCAGGAAGTGGCTTCTTTGAAGCAACAATAAATGGAAGGGGAGGTCATGCAGCCATCCCTCAGCACTCTATAGATCCAATATTGGCAGCTTCCAATGTGATCGTTAGCTTACAACATATTGTTTCACGCGAGGCTGATCCTCTAGACTCCCAGGTTGTGACTGTAGGAAAATTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCAGTCACAATTGGTGGCACCTTCCGAGCCTTTTCAAAAGAAAGCTTCATGCAACTGAGGCAGCGGATTGAGCAGGTTATCACTGGGCAAGCTGCTGTGCAGAGATGCAATGCAACTGTCAACTTTCTTGATGAAGAGAAATCTTTCTTCCCCCCAACAGTAAACGATGGTGACTTGCATGAGTACTTTAAAAGTGTTGCTGGGAGTTTGCTTGGCATCGATAAAGTTAAGGACATGCAACCGTTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCGGGATACATCTTCCTCCTTGGAATGGAGAATGCCTCTATTGAACGTCTTGAGTCACCACATAGTCCATATTTCAGAATCAATGAAGATGCACTTCCCTATGGAGCTGCACTTCATGCTTCTTTAGCTACTAGGTGCCATGTTCTTGTTCTAGCGCTGCCGAATGAATGCATAAAGATATTCCTTGACCATGATATGATATATGATTGGTGGTCCATAACAGCATTCCGTTACGCAAGGTGTTCGAGTGCACAAGAGTTTGGCCGCGAAATGGCGAGCATTTCAAATCTAACGAACATTCTGCCACTGCACATCCGAAGGTTCCGACCTTCTCTGTGCACTCTCTCTTGCTCCCTCGCCGAAGACGTCGACCCCAAACCCTCCATTCCCAACCCCAGTTCCTACTTCCCGAAGCGTGGCCAAACCCTCGAACTCGTCTGCGAGTCCCTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTCACCCAAACCGGCTTCGTCGTCCTCTGCGACCGCGCTCTTCCCGGCGAACACTTCATAGGCCGCGTCACTCGCAAGAAGGGAAATTACGCTGAGGTAACTAAGGTGAAGACTTTAACTCCTCCTCGTGACATTGTGGATGCTCCTTGTGTCTATTCCCCTTACTGCGGCGGCTGCAAGACGCAGAACTTGTCCTACGAGGCTCAGATTAGAGCTAAGGAGGAGCAGGCACGTGACTTGTTGATTCACGTGGGGAAGTTTTCTCGCGAACTAGTTCAACTCCACGATGTTATGAAGCCCATTGTTCCTTGTGATGTTCAGTTTCATTATAGGAATAAGATGGAATTCTCGTTTGGTCCTCAAAGATGGTTGCCTAAAGAATCACTGAAAGACAGAAATGATGATGCTGGTAGTGAAAACTATGCGCTGGGGTTGCATGCTCCTGGTTTTTTTGATAAAATTTTGAATGTTGATAAGTGCTTACTGCAATCTGATCCTGCTAATAAGGTACTTGCGGCTATCCAAGAATGTTGGAGAGATCCACAACTTGGTTTTTCTCCCTATAATGTTCATTCACACAAGGGATTTCTTAAGCATTTGATGCTGAGAACTGGAAGGGATGTAACAACTGGTCTGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCGTACAAGCCAGAAATGTTGAAGTTCCTAGTTGATAAAGTTTCCACATTTCCTGAAGTGGTAAGTGTTGTTAATAACGTAAATACTTCTGTTGGTAACACATCTGTTGGGGAGGAAGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACGAATACTTTTCAGGCAGAGGTTTTATATAAGCTTATAGAAGATTGTGCCAGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGTGTAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCGTCTTAATGCCAAGATAAATGGCATACAAAATGCAACATTTGTCCAGGGAGATCTCAATAAAATTGATGAGAACTTTGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAGGTTTCGTTGCTCTAAGTTTCCTTATTTCTACTTATTTTTTCGCTATATTTATTTCTCTCAATTAG 2835 0.4427 MGSFFKWINLLVFFHFLAATTIFTFSSNAIAITKFLDLAKDPRVFDWMVGIRRKIHENPELGYQEFETSQLIRVELDKLGISYKYPVSVTGVIAFIGTGHPPFVAIRADMDALPMQEMVEWAHKSKVPGKMHACGHDAHVAMLLGAAKILKEHENEIQGTVVLVFQPAEEGGGGAKKILDAGVLENISAIFGLHVAPNLAIGEVASRSGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREADPLDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRQRIEQVITGQAAVQRCNATVNFLDEEKSFFPPTVNDGDLHEYFKSVAGSLLGIDKVKDMQPLMGSEDFAFYQEVFPGYIFLLGMENASIERLESPHSPYFRINEDALPYGAALHASLATRCHVLVLALPNECIKIFLDHDMIYDWWSITAFRYARCSSAQEFGREMASISNLTNILPLHIRRFRPSLCTLSCSLAEDVDPKPSIPNPSSYFPKRGQTLELVCESLAFKGKGLCKVTQTGFVVLCDRALPGEHFIGRVTRKKGNYAEVTKVKTLTPPRDIVDAPCVYSPYCGGCKTQNLSYEAQIRAKEEQARDLLIHVGKFSRELVQLHDVMKPIVPCDVQFHYRNKMEFSFGPQRWLPKESLKDRNDDAGSENYALGLHAPGFFDKILNVDKCLLQSDPANKVLAAIQECWRDPQLGFSPYNVHSHKGFLKHLMLRTGRDVTTGLPEVMVNFVTSSYKPEMLKFLVDKVSTFPEVVSVVNNVNTSVGNTSVGEEEYTLYGKSSITETLRGLTFQISANSFFQTNTFQAEVLYKLIEDCARVRGDGSEIVLDLFCGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFVQGDLNKIDENFGKNFPKPDIVISGFVALSFLISTYFFAIFISLN 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00237 944 CDD M20_IAA_Hyd 48 421 IPR044757 GO:0009850|GO:0016787
Cca10g00237 944 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 421 IPR017439 GO:0016787
Cca10g00237 944 Gene3D - 646 818 - -
Cca10g00237 944 TIGRFAM amidohydrolases: amidohydrolase 48 410 IPR017439 GO:0016787
Cca10g00237 944 PANTHER AUXIN CONJUGATE HYDROLASE 1 421 - -
Cca10g00237 944 SUPERFAMILY Zn-dependent exopeptidases 44 421 - -
Cca10g00237 944 Gene3D - 509 591 IPR012340 -
Cca10g00237 944 ProSiteProfiles TRAM domain profile. 512 572 IPR002792 -
Cca10g00237 944 Pfam Peptidase dimerisation domain 214 310 IPR011650 -
Cca10g00237 944 SUPERFAMILY Bacterial exopeptidase dimerisation domain 213 332 IPR036264 -
Cca10g00237 944 Gene3D Zn peptidases 48 408 - -
Cca10g00237 944 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 592 944 IPR010280 GO:0006396|GO:0008173
Cca10g00237 944 Gene3D - 213 331 - -
Cca10g00237 944 CDD AdoMet_MTases 851 931 - -
Cca10g00237 944 Pfam Peptidase family M20/M25/M40 105 419 IPR002933 GO:0016787
Cca10g00237 944 Gene3D Vaccinia Virus protein VP39 819 933 IPR029063 -
Cca10g00237 944 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 581 927 IPR029063 -
Cca10g00237 944 SUPERFAMILY Nucleic acid-binding proteins 507 567 IPR012340 -
Cca10g00237 944 TIGRFAM rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 526 913 - -
Cca10g00237 944 Pfam Methyltransferase domain 850 913 IPR025714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00237 Cca-Chr10 2610404 2618856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00237 - - vun:114183834 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00237 10 2610404 2618856 Cca10g00237 10 2610404 2618856 ECH
Cca10g00237 10 2610404 2618856 Cca11g00288 11 3624983 3629080 PCT