Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00276 ATGATGGAAAAAATATTTGGAAGGTTTTTGAAATGGAAAACGAAAGAGGAGAAGAGCATGAAGCCTTTTCTCCTGAAATGTGGTCTTGCTTTGGCTCTTACCTTAGCTGGATTTCTCTACTCTCACGTCAGAACCAAAAGAATCAAACCCTCTGCTACTTCCCCCAGGGGCCACCCTTCAGATCATGGAAGCGAAGTTAATGTAGGAAGAGGTAACAGGGTTGCATCTAGTTTTTGCAGCACTGTTTCCGAGGAAAATATGTTGGATAATGAAGAAACATGCATCAACAAGGTGATTGGTAAAAACTCCCCATTGGGTCTCTCTCCAAGAACTAAACATAGTGGAGAGAAAGATGAGTTCCTCCTGCCTGAGTTTAATGATCTTACCAAGGAAGCAGAGTTTGAAGGCACTATTTCAGGTAGTTCTTTTAAGAAAGAAGTAGAAACGCCAAGGTCAAGAGTAGGATCTCCCATGGCATATACAAGTTTTGAGAAGGATGATTATGAGAAAGAGATCAGGAGACTCAGGAGCATGATCAGAATGCTTCAAGAGAGGGAAACAAATCTCGAGGTTCAATTGCTTGAGTTCTGTGGCCTTAGAGAGCAAGAAGCAGCAGTGATGGAGCTCCAAAATAGATTGAAGATAAGCAATATGGAGGCAAAGATGTTCAATCTAAAGGTTGAGACCTTACAGTCTGAGAATCGGAGATTAGAGGCACAAGTGTCTGATCATGCAAAACTTATGTCTGAGCTTGAGAACGCAAAAGCAAAAGTCAAGTTTTTGAAGAAGAAAATCAGGTATGAAGCTGAACAGAACAGGGAGCTTATCATAAATCTTAAACATAAAGTTTCCAAGATGCAAGATCAAGAACTGAAAGCTGCTGCTAGTGATCATGAGATTCAAATAAAGCTGACAAAGCTAAAGGATCTCGAGTGTGAGGCAGAACAGTTGAAGAAATCTAATTTGAGACTGCAGATGGAAAATTCTGACTTAGCTCGAAGATTGGATTCTACTCAGGTCCTTGCAAATGCTGTTCTAGAAAACCCAGAGGCAGATTCTTTGAAAGAAGAAAGTGAGCGTTTTAGAAAAGAGAATGAACGGTTGATGAAAGAAATGGAGCAACTACATGCTGATAGATGTTCAGATCTTGAAGAACTAGTTTATCTACGGTGGATAAATGCTTGCTTAAGACATGAGCTACGAAATTATCAACCTCCATCTGGTAAAGCAGTTGCAAGGGACTTGAGTAAAAGCTTGAGTCCTACATCTGAGAAAAAAGCCAAGCAGCTTATACTTGAATATGCAAATAATGACAGGCGAGCCAGCAATTCTGATTTGGACTCTGACCAATGGTCCTCTTCCCAGGCTTCTTTTCTCACAGATTCTGGAGAGCGTGATGACTATTCTCCTCTAGATAATTCATCTGAGGCCAAAGCAAACAATACAAGCAACAAAGGCAAGTCAAGGATTTTTGGCAAGCTTATGAAGCTGATACGAGGCAAAGATGGCCCGCATCATCGTGTTCGAATTCCATGTAAAGGAAAAGCAATGTCTCGAGAAGATAGCAATACTTCACAGTTCAGCTTGAGTATACCAAATGGAAATGATACTGGAATTGAGGGTCTTCGGAGTGAGAATGCAACTCCCGGTGCCACATCTAGAACTTCCTTTGAATATAACCAGACACAGAGTTTGAAGGATGAAAGTAGGAGAAATTCGTATAGCCATACTCCAGGAAGCTCAAAGAATTTGAGTCCAAGGAGAAGAAGTTCAGTGGATTTCAAAAACCGCGTTGATTCTTTCTCAGAATCATCTGGCATGGACAAATCTAATTTGGTGAAATATGCTGAAGCTTTAAGAAAATCAGATGATACTCCCAATCATAAATCGCATAGAAGATCAGCAGCATATAGTTCATTTTAA 1923 0.4041 MMEKIFGRFLKWKTKEEKSMKPFLLKCGLALALTLAGFLYSHVRTKRIKPSATSPRGHPSDHGSEVNVGRGNRVASSFCSTVSEENMLDNEETCINKVIGKNSPLGLSPRTKHSGEKDEFLLPEFNDLTKEAEFEGTISGSSFKKEVETPRSRVGSPMAYTSFEKDDYEKEIRRLRSMIRMLQERETNLEVQLLEFCGLREQEAAVMELQNRLKISNMEAKMFNLKVETLQSENRRLEAQVSDHAKLMSELENAKAKVKFLKKKIRYEAEQNRELIINLKHKVSKMQDQELKAAASDHEIQIKLTKLKDLECEAEQLKKSNLRLQMENSDLARRLDSTQVLANAVLENPEADSLKEESERFRKENERLMKEMEQLHADRCSDLEELVYLRWINACLRHELRNYQPPSGKAVARDLSKSLSPTSEKKAKQLILEYANNDRRASNSDLDSDQWSSSQASFLTDSGERDDYSPLDNSSEAKANNTSNKGKSRIFGKLMKLIRGKDGPHHRVRIPCKGKAMSREDSNTSQFSLSIPNGNDTGIEGLRSENATPGATSRTSFEYNQTQSLKDESRRNSYSHTPGSSKNLSPRRRSSVDFKNRVDSFSESSGMDKSNLVKYAEALRKSDDTPNHKSHRRSAAYSSF 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00276 640 MobiDBLite consensus disorder prediction 446 462 - -
Cca11g00276 640 Coils Coil 165 192 - -
Cca11g00276 640 Coils Coil 300 334 - -
Cca11g00276 640 MobiDBLite consensus disorder prediction 614 631 - -
Cca11g00276 640 Coils Coil 199 271 - -
Cca11g00276 640 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 13 640 IPR040265 -
Cca11g00276 640 MobiDBLite consensus disorder prediction 441 640 - -
Cca11g00276 640 MobiDBLite consensus disorder prediction 518 587 - -
Cca11g00276 640 MobiDBLite consensus disorder prediction 49 69 - -
Cca11g00276 640 MobiDBLite consensus disorder prediction 405 424 - -
Cca11g00276 640 PANTHER FAMILY PROTEIN, PUTATIVE-RELATED 13 640 - -
Cca11g00276 640 Coils Coil 351 378 - -
Cca11g00276 640 MobiDBLite consensus disorder prediction 473 488 - -
Cca11g00276 640 MobiDBLite consensus disorder prediction 495 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00276 Cca-Chr11 3453405 3457256 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00276 - - gmx:100781632 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00276 11 3453405 3457256 Cca11g00276 11 3453405 3457256 ECH
Cca10g00227 10 2416959 2420798 Cca11g00276 11 3453405 3457256 PCT