Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00227 ATGATGGTGATCAGAGAGGAGAGGGGTGTGAAGCCCGTTCTACTGAAATTTGGTTTGGCTTTGGCTGTTTCATTTGCTGGATTTCTCTTCTCACGCCTCAGAATCAGAAGAATCAAGCCCCCAAAGTCACGCAAGGGGCGTTCTTTCGGTCATGAGAGTGAAGTTAACGTAGGAGGAGGAATAGGGGCAAAATTAGGTACTTGCAAAGCCATTTCAGAGGGAAATTTTCTATGTACTGAAGAAACATGCATGAACAGGGTGATAAGTGACAATTCTCCTGTGGCTCTCTCTCCTGACGCTGATAGTATACAAACTGGATATAAAGATGAGTTCCTCCTACCTGAATTTGACGATCTTGTTAAGGAAGTAGACTTAGGAGCCACCATTGTCAGAAATTCTTTTATAAGTAATATGGAAGCACCCAGGTTAAAAATAGGATCTTCTATAGCTTATGTAGGTCCTGAGAAAGATGACTATGAGCAAGAGATAAGTCAACTCAGGAACATGATTAGAATGCTTCAAGACAGGGAACAAAGGCTTGAAGTTCAACTGCTTGAGTACTGTGGTCTTAGAGAGCAAGAAACAGCAGTGATGGAGCTACAAAACAGATTGAAAGTAAGTAATATTGAGGTAAAGATGTACAATCTGAAGGTTAAGACCTTACAGTCTGAGAATTGGAGATTAAAGGAACAGGTTGCTGATAATGCAAAAGTGCTGGCTGAGCTTGAGACTGCAAAAGCGAAAGTCAAATTGCTTGATGAGAAAATCAGATATGAAGCTGAACAGAATAGGGAGCAGATCATAACTCTTCAACAAAATGTTGCTAGGTTGCAAGACCAAGAGTGCAAAGATGTTGCTTGTGATCAAGATATTCAAATAAAGCTGCAAAAGCTAAAGGATCTCGAAGATGAAGCAGAAGAGTTGAGGAAATCTAATTTAAGATTGCAGATAGAAAATTCTGACTTGGCTGGAAGATTGGATTCTACCCAGATTCTTGCAAATGCATTTCTGGATGACCCAGCGGTAGATGCTGTGAAGAAAGAAAACGAGTGTATTAAACAAGAAAATGTGCGCTTGATGAAGGAAATTGAGCAACTTCAATCTGACAGATGTTCAGATCTTGAGGAGTTAGTATATATGAGGTGGATAAATGCTTGCTTACGATATGAACTAAGAAATCATCAAGCCCCACCTGGTAAAACAATTGCAAAGGACTTAAGCAGAAGCTTAAGCCCTGCATCTGAGAAGAAAGCCAAGCAACTTATACTTGAATATGCAAATGCTGATGGACCAGAGAGCATTGTGGACTTTGATATAGACCAATGGTCTTCCTCCCATGCTTCTTCTCTCACTGACTTTGGAGAGTGTGATGATTTTTCTTCTGCTGATAATTCATCTGCTGCCAGAGCCAGAACTAACACCACACGCCAGACCAAGCTTTTTAGCAAGCTTAGCCAACTGATACAAGGTAAAGATAGTAGTCATCACCATAGTCATGTTTCATCACAAGAAAAATCTGGATATCAAGATATCAATCCTCCACAGCTGAGTACATCAACTGGAACCGAGGCTCTTAGGAGTGAGTTTTCTACTTCCATTGTAACATCTAGAACTTCCTTTGATTTCTCAAATTTTGCGAGTATGAAGGAAGGAGATAGGAGAAATTCAGATAGCATTGCCATGGGAGGCTCAAATAAATTCAGTGCACGAAAAAAAGGTTCCTTCTCAGATTCCTTAGGCATGGAAAAATATGATTTGGAGAAGTATGCCGAAGCTTTAAAAGATTCTAGCTTGAGTGTTAGACATCAAAGGCGTAGAAGATCAGCATCATGTAGTTAG 1839 0.4018 MMVIREERGVKPVLLKFGLALAVSFAGFLFSRLRIRRIKPPKSRKGRSFGHESEVNVGGGIGAKLGTCKAISEGNFLCTEETCMNRVISDNSPVALSPDADSIQTGYKDEFLLPEFDDLVKEVDLGATIVRNSFISNMEAPRLKIGSSIAYVGPEKDDYEQEISQLRNMIRMLQDREQRLEVQLLEYCGLREQETAVMELQNRLKVSNIEVKMYNLKVKTLQSENWRLKEQVADNAKVLAELETAKAKVKLLDEKIRYEAEQNREQIITLQQNVARLQDQECKDVACDQDIQIKLQKLKDLEDEAEELRKSNLRLQIENSDLAGRLDSTQILANAFLDDPAVDAVKKENECIKQENVRLMKEIEQLQSDRCSDLEELVYMRWINACLRYELRNHQAPPGKTIAKDLSRSLSPASEKKAKQLILEYANADGPESIVDFDIDQWSSSHASSLTDFGECDDFSSADNSSAARARTNTTRQTKLFSKLSQLIQGKDSSHHHSHVSSQEKSGYQDINPPQLSTSTGTEALRSEFSTSIVTSRTSFDFSNFASMKEGDRRNSDSIAMGGSNKFSARKKGSFSDSLGMEKYDLEKYAEALKDSSLSVRHQRRRRSASCS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00227 612 Coils Coil 342 369 - -
Cca10g00227 612 Coils Coil 260 280 - -
Cca10g00227 612 Coils Coil 190 210 - -
Cca10g00227 612 MobiDBLite consensus disorder prediction 487 523 - -
Cca10g00227 612 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 2 612 IPR040265 -
Cca10g00227 612 MobiDBLite consensus disorder prediction 549 576 - -
Cca10g00227 612 Coils Coil 156 183 - -
Cca10g00227 612 MobiDBLite consensus disorder prediction 504 523 - -
Cca10g00227 612 Coils Coil 291 318 - -
Cca10g00227 612 PANTHER FAMILY PROTEIN, PUTATIVE-RELATED 2 612 - -
Cca10g00227 612 Coils Coil 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00227 Cca-Chr10 2416959 2420798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00227 - - gmx:100796238 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00227 10 2416959 2420798 Cca10g00227 10 2416959 2420798 ECH
Cca10g00227 10 2416959 2420798 Cca11g00276 11 3453405 3457256 PCT