Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00275 ATGCTTTCGTTCTCCCTTTCCGGTTTCCCTTCACTCCCACTCCGCAGAACAGAAGCATATCTAAGAGTAAGTGCAAGCTTTGGCATTGACACCCCACAAGAGCCAAATTCAACCAACCCTCATGGTCATGGCTCGGATGCTAAACATGAAGACGACTTTCgaaagggaaaggggaagggaagtgggagagtgaTTGGGGGTGGTGGTGGGGTTGTTATTGgaaggaagaagaagaagaatgcgaaggagaagGTTCAATGGGTTTGCAGCAATTGTGGGTACAGTGCAGGGCAATGGTGGGGCGTGTGCCGCTCCTGCAGTGTGTCTGGCACCATGAAAGAGGCCAGATTCGGTGATGATTCTGATAGTGTGGTTAGTGGGTTTTCAGTTTTGGAGGATGGTGTGGGGTCTTGGCTCCCCCAACAGGAAGGTGAGATGCGTCCCTTGAGATTGGCAGAGGTTAACAGGGGACTTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCGTTTGGAGATGAAGTTTCCAGAGTGCTTGGCGGTGGTCTCGTACCAGGCTCATTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTGTTGTTGCAGATAGCTGCAATTATTGCAGAAGGACACAATGATGGTGAAACATCTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGACCGCCTTAGAATCGAATCGGATATTTATTTATATTCAAGTAATGATGTTGAGGACATATTGAAGAAAGTTCAGTATCTCTCCCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGAAATAATGGGAAGTCCCGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTACTGCGATTTGCGAAGAAGACAAACATCCCTGTTCTTTTGATTGGACATGTGACAAAGTCTGGAGACATAGCAGGGCCTCGTGTCTTGGAGCATATTGTTGACGTTGTTTTGTATATGGAAGGTGAGAAGTACTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGTTTTGGATCCACCGATGAGCTAGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCAGTGAACAGCACATGGATTCAGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGGCACTCTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAAGTAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCGAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGGCTGAGACTGCAGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCTATTCCAAATGATGTGGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTGTACACCGTTGCGAAATTGGGTTTCAGAATGTGTATAGTACCCAAGGTGGCTGAAAAAGCTTTAGGAACTGAAGGTTTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTATTCCCCAATATAATGAGAAGGTAG 1695 0.4271 MLSFSLSGFPSLPLRRTEAYLRVSASFGIDTPQEPNSTNPHGHGSDAKHEDDFRKGKGKGSGRVIGGGGGVVIGRKKKKNAKEKVQWVCSNCGYSAGQWWGVCRSCSVSGTMKEARFGDDSDSVVSGFSVLEDGVGSWLPQQEGEMRPLRLAEVNRGLDHHHWRIPLSGPFGDEVSRVLGGGLVPGSLTLIGGDPGVGKSTLLLQIAAIIAEGHNDGETSPVVYVSGEESVEQIGNRADRLRIESDIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLKEIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHMDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQVNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSSCLEIPIPNDVAFIGEIGLGGELRMVPRMEKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEVINTVFPNIMRR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00275 564 Gene3D - 173 374 IPR027417 -
Cca11g00275 564 ProSiteProfiles RecA family profile 1. 164 317 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cca11g00275 564 Pfam AAA domain 178 321 - -
Cca11g00275 564 MobiDBLite consensus disorder prediction 29 71 - -
Cca11g00275 564 SUPERFAMILY Ribosomal protein S5 domain 2-like 354 558 IPR020568 -
Cca11g00275 564 MobiDBLite consensus disorder prediction 43 59 - -
Cca11g00275 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 368 IPR027417 -
Cca11g00275 564 Pfam Subunit ChlI of Mg-chelatase 434 528 - -
Cca11g00275 564 PANTHER DNA REPAIR-LIKE PROTEINRADA 66 558 - -
Cca11g00275 564 TIGRFAM sms: DNA repair protein RadA 81 553 IPR004504 GO:0003684|GO:0005524|GO:0006281
Cca11g00275 564 Pfam Rubredoxin metal binding domain 87 114 IPR041166 -
Cca11g00275 564 PRINTS DNA repair protein radA signature 89 113 - -
Cca11g00275 564 PRINTS DNA repair protein radA signature 177 205 - -
Cca11g00275 564 PRINTS DNA repair protein radA signature 273 297 - -
Cca11g00275 564 PRINTS DNA repair protein radA signature 312 340 - -
Cca11g00275 564 PRINTS DNA repair protein radA signature 347 373 - -
Cca11g00275 564 PRINTS DNA repair protein radA signature 422 445 - -
Cca11g00275 564 PANTHER DNA REPAIR PROTEIN RADA 66 558 - -
Cca11g00275 564 Gene3D - 393 563 IPR014721 -
Cca11g00275 564 SMART AAA_5 185 343 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00275 Cca-Chr11 3436924 3445209 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00275 K04485 - gmx:100794165 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00275 11 3436924 3445209 Cca11g00275 11 3436924 3445209 ECH
Cca10g00226 10 2397229 2413931 Cca11g00275 11 3436924 3445209 PCT