Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00226 ATGACGAGGCTCCTCAGAACGATCTTCATCGCGCACAAGCTCCACCTCCGCAACCCCAACCGCATTCTTCCATCTCTCGTTTCCCACTACTCCTCCGCAACCACTGACTCATCCGATCCCACTGAGGTCCAAAAAACAACAATCCAATCCACCGGAAGTTGGAGCAGCTACGCAAACGTCTATGACCGCCCGGTCGCGCAGCCCGAGCCAAGCGCGCAACCCGAGCCAAGCGCGCAACCCGAGCCAAGCACGCAACCCGAGCCAAGCGACCACAGCGACGAAGACGAAGGCGAAGACGAAAACCCTagcagcagcagcaggagtagagcaCTGAGTTTCGCAGTGACCAAGAGAAGGGGGAAGGTGAAAACTCAGTGGGTGTGCGAGGTTTGTGGATACACAGTAGGGCAATGGTGGGGGACATGCCCCTCCTGCAAAGTATCTGGCACAATGATAGAGTATAACGAAACCAAATTAACCGACAGGCACCGAGGTGGCTTAGCCGTTTCCGAGGATTCCGTGGCCTCGTGGCTCCCCCAGCGGTCCCAAGAGTTGCGCCCCCTCAAATTGGACGAGGTCAACCGTGGATTCGATCACGAGAAATGGAGAATTCCTTTATCCGGGTCTTTTGGAAATGAGATTTCTACCGTGCTTGGTGGAGGTCTTGTACCAGGTTCTTTAACTTTAGTTGGTGGTGATCCGGGTATTGGGAAGAGCACTCTGCTGTTGCAGATTGCAGCAATGATAGCGAAAGAAGGCAGTGATGGTGGAGCACCTCCAGTTGTATATGTCTCTGGCGAAGAGAGCCTTCAGCAAATAGGTAATAGAGCAGACCGCCTTGGGATTCAATCCAATATTTATTTATATTCAAGTACTGATATTGAGGACATATTGATGAAAACTCATCGTCTATCCCCTCGTGCTCTGGTGGTTGATTCTATACAAACTGTTTACCTGAAAACAGTAGTAGGAAGTGCTGGAGGGATTATGCAGGTGAAGGAATGTACTGCTGCTTTGATGCGATTTGCAAAAACAACTAACATCTCAGTTTTTTTGATAGGACACGTGACTAAATCTGGAGAGCTAGCGGGACCTCGTGTCTTGGAGCATATCGTCGATGTTGTTTTGTATATGGAAGGTGAGAAGTACTCTCCATATCGAATGCTTCGAGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGCAGTTCTTGAGATGTCACAGTCAGGACTCCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCACTCAACAACACACTGATTCAAATGTTTTAACTGGGCTTGCTATTGCAGTAATAATGGACGGTACAAGAACTTTTTTAATTGAAATTCAGGCACTTTGCCTTTCACAATGTTCTGTTTCAAGTTCGGTATTTAATGGGATCCAGGCAAACAAAGCTAATATGATTAAATGTGTTCTTATAAAGCAAGTGGGTCTTCATCTCCAAGAAAATGCTATGTTTCTGAATATTGTTAGCGGATTGACAATGTCAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCAGAAGGGACTGCATTCATTGGGGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTTAATACATTATCGAAGTTGGGTTACAGAATGTGTGTAGTACCAAAGCAAGCTGAAAAACTTTTAGGAAACGAAGTTCCAGAGAAGTTGAAAGTTGTATATTGCAACGATCTGAAAGAGGTTATTGACGCTGTATTCAGAAGAGATAATTAA 1809 0.4561 MTRLLRTIFIAHKLHLRNPNRILPSLVSHYSSATTDSSDPTEVQKTTIQSTGSWSSYANVYDRPVAQPEPSAQPEPSAQPEPSTQPEPSDHSDEDEGEDENPSSSSRSRALSFAVTKRRGKVKTQWVCEVCGYTVGQWWGTCPSCKVSGTMIEYNETKLTDRHRGGLAVSEDSVASWLPQRSQELRPLKLDEVNRGFDHEKWRIPLSGSFGNEISTVLGGGLVPGSLTLVGGDPGIGKSTLLLQIAAMIAKEGSDGGAPPVVYVSGEESLQQIGNRADRLGIQSNIYLYSSTDIEDILMKTHRLSPRALVVDSIQTVYLKTVVGSAGGIMQVKECTAALMRFAKTTNISVFLIGHVTKSGELAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSQSGLQAVSNASEMFLTQQHTDSNVLTGLAIAVIMDGTRTFLIEIQALCLSQCSVSSSVFNGIQANKANMIKCVLIKQVGLHLQENAMFLNIVSGLTMSETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVPRIDKRVNTLSKLGYRMCVVPKQAEKLLGNEVPEKLKVVYCNDLKEVIDAVFRRDN 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00226 602 Gene3D - 425 602 IPR014721 -
Cca10g00226 602 MobiDBLite consensus disorder prediction 69 83 - -
Cca10g00226 602 SMART AAA_5 224 382 IPR003593 -
Cca10g00226 602 PANTHER DNA REPAIR-LIKE PROTEINRADA 3 602 - -
Cca10g00226 602 SUPERFAMILY Ribosomal protein S5 domain 2-like 393 598 IPR020568 -
Cca10g00226 602 Gene3D - 212 413 IPR027417 -
Cca10g00226 602 MobiDBLite consensus disorder prediction 65 114 - -
Cca10g00226 602 Pfam Rubredoxin metal binding domain 126 153 IPR041166 -
Cca10g00226 602 PANTHER DNA REPAIR PROTEIN RADA 3 602 - -
Cca10g00226 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 407 IPR027417 -
Cca10g00226 602 MobiDBLite consensus disorder prediction 31 50 - -
Cca10g00226 602 Pfam AAA domain 218 360 - -
Cca10g00226 602 PRINTS DNA repair protein radA signature 128 152 - -
Cca10g00226 602 PRINTS DNA repair protein radA signature 312 336 - -
Cca10g00226 602 PRINTS DNA repair protein radA signature 386 412 - -
Cca10g00226 602 PRINTS DNA repair protein radA signature 462 485 - -
Cca10g00226 602 PRINTS DNA repair protein radA signature 351 379 - -
Cca10g00226 602 PRINTS DNA repair protein radA signature 216 244 - -
Cca10g00226 602 ProSiteProfiles RecA family profile 1. 203 356 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cca10g00226 602 Pfam Subunit ChlI of Mg-chelatase 483 569 - -
Cca10g00226 602 TIGRFAM sms: DNA repair protein RadA 121 593 IPR004504 GO:0003684|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00226 Cca-Chr10 2397229 2413931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00226 K04485 - gmx:100791181 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00226 10 2397229 2413931 Cca10g00226 10 2397229 2413931 ECH
Cca10g00226 10 2397229 2413931 Cca11g00275 11 3436924 3445209 PCT