Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00273 ATGTACAGAGTAGCGGCTACATCGCTCAGAAGGCATCTCAAGGGCTATGGAGGGAAGTTGAGATCCACTGGGTATTCCACTTCAGCTGCTGTAGCTACGAAGGCTTCCAATGGTGGTTTGTTTAGCTGGCTTACTGGGGAGACTTCTAGGTCCCTTCCTCCTCTGGACATACCACTTTCCGGTGTTGCTCTCCCAGATCCAGTTCCAGATCATGTTGAAACAAGCAAGACCAAGATCACTACACTCCCCAATGGACTCAAAGTAGCATCAGAGATGTTGTCTAACGCTGCAGCTTCAATCGGGTTATATCTTGACTGTGGTTCCATCCATGAGACCCCATTGTCAAGTGGGGCTTCACACTTGCTAGAGCGAATGGCTTTCAAAAGCACAACAAACCGTAGTCACTTCCGTATTGTAAGGGAAGTAGAAGCAATTGGTGGTAATGTAGGAGCCTCTGCCTCTCGTGAGCAAATGGGTTATACATTTGATGCCTTGAAGACTTATGTTCCACAAATGGTTGAATTACTGGTTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAGGTCAATGAAGAGCTTCGAAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAGGGCTTGCTTTTGGAAGCAATTCACTCTGCTGGTTATTCTGGTGCATTGGCTTATCCTCTTTTGGCTCCTGAAGCAGCACTGAACAGATTGGACGGCGCCATTTTAGAGGAATTTGTTGCTGAGAATTACACAGCACCTAGAATGGTACTTGCAGCATCTGGGGTTGAGCACGAAGAGCTTCTATCTGTTGCTGAACCACTTCTCTCTGATCTACCAAAAGTTCCTCGTCCTGAAGAACCAAAATCTATCTATGTTGGGGGTGATTTTCGTCGTCATGGTGAATCAGCGGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGCGGCTGGCAAACAGAGAGAGATGCTATTGTTTTGACTGTTTTACAGATGCTTATGGGAGGAGGTGGGTCATTCTCCGCAGGGGGCCCAGGAAAAGGGATGCACTCAAGGCTATATCTTCGTGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCAACAGTATCTTCAATAATACAGGACTATTTGGCATTTATGCAAGCACTAGCCCTGATTTTGTGCCAAAAGCTGTGGAAATAGCAGCCAAAGAACTGCTATCAATTGCATCCCCTGGACAAGTTTCACAGGTACAGCTTGACCGAGCCAAAAAAACCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGAATGATTGCATCCGAAGATATAGGAAGGCAAATTTTGACTTATGGAGAAAGGAAGCCTGTGGAACAATTCTTGAAGGTTGTTGATGAAATCACGTTGGATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGTCTTGAATGTTCCCAGTTATGAATCTGTTAGCAGCATCTTCCATGCAAAATGA 1521 0.4484 MYRVAATSLRRHLKGYGGKLRSTGYSTSAAVATKASNGGLFSWLTGETSRSLPPLDIPLSGVALPDPVPDHVETSKTKITTLPNGLKVASEMLSNAAASIGLYLDCGSIHETPLSSGASHLLERMAFKSTTNRSHFRIVREVEAIGGNVGASASREQMGYTFDALKTYVPQMVELLVDCVRNPAFLDWEVNEELRKVKAELGELSNNPQGLLLEAIHSAGYSGALAYPLLAPEAALNRLDGAILEEFVAENYTAPRMVLAASGVEHEELLSVAEPLLSDLPKVPRPEEPKSIYVGGDFRRHGESAGTHVAIAFEVPGGWQTERDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYASTSPDFVPKAVEIAAKELLSIASPGQVSQVQLDRAKKTTKSAVLMNLESRMIASEDIGRQILTYGERKPVEQFLKVVDEITLDDITKISQKIISSPLTMASYGDVLNVPSYESVSSIFHAK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00273 506 Pfam Insulinase (Peptidase family M16) 88 232 IPR011765 -
Cca11g00273 506 Pfam Peptidase M16 inactive domain 244 423 IPR007863 -
Cca11g00273 506 ProSitePatterns Insulinase family, zinc-binding region signature. 107 130 IPR001431 GO:0004222|GO:0006508
Cca11g00273 506 Gene3D - 291 501 - -
Cca11g00273 506 PANTHER MITOCHONDRIAL-PROCESSING PEPTIDASE SUBUNIT ALPHA-LIKE 21 505 IPR037715 GO:0006627
Cca11g00273 506 SUPERFAMILY LuxS/MPP-like metallohydrolase 305 497 IPR011249 GO:0046872
Cca11g00273 506 PANTHER METALLOPROTEASE 21 505 - -
Cca11g00273 506 SUPERFAMILY LuxS/MPP-like metallohydrolase 76 286 IPR011249 GO:0046872
Cca11g00273 506 Gene3D - 66 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00273 Cca-Chr11 3419297 3425127 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00273 K01412 - gmx:100810990 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00273 11 3419297 3425127 Cca11g00273 11 3419297 3425127 ECH
Cca10g00224 10 2386217 2390863 Cca11g00273 11 3419297 3425127 PCT