Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00224 ATGTATAGAGCTGCAGCTTCACGTCTCACCCTTTCCAAGGGCAATGGGAGAACCTTGGGAGCCTCCAGATTTGCCACTTCACGAGGTTTATTCAGCTGGCTTACTGGGGAATCTTCCACTTCTCATCCTCCTCTTGACACCCCACTTAGAGGGATTTCCCTGCCACCTTCACTGCCAGATTATGTTGAACCAAGCAACACCAAGATCACAACTCTCTCCAATGGTCTAAAAATAGCATCAGAAACCTCACAGAGCCCTGCTGCCTCAATAGGGTTATATATAGACTGTGGTTCCCTCTATGAGACGCCATGGTCAAGCGGGGCGTCACACCTTCTAGAAAAAATGGCTTTCAAGAGCACAACAAACCGAAGTCAATTTCGTGTTGTTAGGGAAATAGAAGCAATCGGTGGCAATGTAGGAGCCACAGCCTCTCGAGAGCAAATGAGCTACACTATTGATGCTCTGAAAACCTATTCTCCACAAATGATTGAGTTGCTGGTTGACTGTGTGAGGAACCCAGCCTTCTTGAATTGGGAGGTCAATGAAGAGCTTGGAAAAGTAAAAACAGAGGTTGGAGAACTATCAAACAATCCCCAGGGCTTACTTTTGGAGGCGGTTCATTCAGCTGGTTTTTCTGGAGCATTGGCTTATCCACTTTTGGCTTCTGAATCAGCACTGAACATATTAAATGGCCCCATTTTAGAGCAATTCGTTGCTGAGAATTATACTGCACCTAGAATGGTTCTTGCAGCATCTGGGGTTGAGCATGAAGAACTTTTATCTGTTGCTGAACCACTTCTCTCTGATCTACCCAGTGCTCCCCGTCCCGAAGAACCAAAATCTACATATGTTGGGGGTGATTTTCGTCGTCAAGGTGAATCAGGGGGTGCACATGTAGCTATTGCTTTCGAAGTGCCTGGTGGCTGGAATAAAGAGAGAGAAGCTATTGTTTTGACAGTTCTACAGATGCTTATGGGAGGAGGTGGGTCGTTCTCAGCTGGAGGGCCCGGAAAAGGGATGCACTCAAGGCTGTATCTCCGTGTCTTGAATGAATATCAGCAGATTCAATCTTTTTCTGCTTTCAACAGTATCTTCAACAACACAGGGCTATTTGGCATATATGCATACACTAGCTCTGATTTTGTGGCAAAAGCTGTGGATTTGGCAGCCAACGAATTAATATCACTTGCTTCACCGGGAGAAGTTACACAGGTACAGCTTGACCGTGCCAAGGAATCCACAAAGTCTGCAGTTCTAATGAATTTGGAGTCCAGAATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACTTATGGAGAAAGGAAGCCAGTGGAGCAGTTCTTAAAGGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTGCTCAGAAAATTATTTCCTCACCTCTCACTATGGCATCCTATGGAGATGTTATCCATGTCCCTAATTACGAATCTGTTAACAGCAAGTTCCATGCAAAATGA 1491 0.448 MYRAAASRLTLSKGNGRTLGASRFATSRGLFSWLTGESSTSHPPLDTPLRGISLPPSLPDYVEPSNTKITTLSNGLKIASETSQSPAASIGLYIDCGSLYETPWSSGASHLLEKMAFKSTTNRSQFRVVREIEAIGGNVGATASREQMSYTIDALKTYSPQMIELLVDCVRNPAFLNWEVNEELGKVKTEVGELSNNPQGLLLEAVHSAGFSGALAYPLLASESALNILNGPILEQFVAENYTAPRMVLAASGVEHEELLSVAEPLLSDLPSAPRPEEPKSTYVGGDFRRQGESGGAHVAIAFEVPGGWNKEREAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAYTSSDFVAKAVDLAANELISLASPGEVTQVQLDRAKESTKSAVLMNLESRMIASEDIGRQILTYGERKPVEQFLKAVDGITLNDITKIAQKIISSPLTMASYGDVIHVPNYESVNSKFHAK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00224 496 SUPERFAMILY LuxS/MPP-like metallohydrolase 66 276 IPR011249 GO:0046872
Cca10g00224 496 Pfam Insulinase (Peptidase family M16) 78 220 IPR011765 -
Cca10g00224 496 PANTHER MITOCHONDRIAL-PROCESSING PEPTIDASE SUBUNIT ALPHA-LIKE 27 495 IPR037715 GO:0006627
Cca10g00224 496 Pfam Peptidase M16 inactive domain 234 412 IPR007863 -
Cca10g00224 496 Gene3D - 280 489 - -
Cca10g00224 496 Gene3D - 59 269 - -
Cca10g00224 496 SUPERFAMILY LuxS/MPP-like metallohydrolase 291 487 IPR011249 GO:0046872
Cca10g00224 496 PANTHER METALLOPROTEASE 27 495 - -
Cca10g00224 496 ProSitePatterns Insulinase family, zinc-binding region signature. 97 120 IPR001431 GO:0004222|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00224 Cca-Chr10 2386217 2390863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00224 K01412 - gmx:100810996 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00224 10 2386217 2390863 Cca10g00224 10 2386217 2390863 ECH
Cca10g00224 10 2386217 2390863 Cca11g00273 11 3419297 3425127 PCT