Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00235 ATGAAGGAGGCAAAAATGAAGAAGGAAGTGGAACTTTGTTCAAGTGAAGTGGAAATGGCTTCTGAACACACTCCACAACCACAAAGGAAAAAGGGTGGTATTGTTACCATGCCTTTCATCATAGCAAATGAAGCACTTGCAAGGGTGGCAACAATTGGCCTTCTGCCAAACATGATACTGTATTTGATGGGGAGTTACAAGTTTCATTTGGCCAAAGCAACACAAGTGCTTCTGTTATCCTCCGCAACAAGCAATCTAACACCACTCATCGGTGCCTTCATTGCTGATTCCTGTCTCGGTCGATTCCTCGCTGTTGGATTGGGTTCCACCATCACTTTCCTGGGAATGGCACTCTTGTGGCTAACAGCTATGTTCCCTCAGGCTAGGCCTCCTCCTTGCAACCCTTTAACCGAAAGATGTAAACAAGCAACATCTGGGCAAATGACAATGTTAATCTCTTCCTTTGCTCTCATGTCCATCGGAAATGGTGGCCTTTCATGCTCCATCGCATTTGGTGCAGACCAGGTGAGCAGAAAAGATAACCCCAACAATCAAAGGGCCTTGGAAATATTCTTCAGCTGGTACTATGCTTCTACAGCTGTTTCTGTCATAATTGCCCTCACAGTAATAGTATACATCCAAGATAATCTTGGATGGAAAGTGGGTTTTGGAGTTCCAGCAGCACTTATGTTCTTGTCCATTATCTCCTTCTTTCTTGCTTCTCCACTTTATGTAAAGAATAAAGTACAAGGCAGCTTGATCACTGGCTTTGCGCGAGTAATAGTTGCGGCCTACAAGAACAGGAAACTTCCTTTACCACCAAGGAACTCAGTTGGAATGTACCATCGCAACAAGGACTCTGATTTTGTTGTGCCAACTCATAAACTAAGGTTTCTGAATAAAGCTTGCATCATTAAAGATCAAGAAAAAGATGTAGCCTCTGATGGATCAGCCTCAAATCCGTGGAGTTTGTGCACAATAGATCAAGTGGAAGAACTAAAAGCTGTTATTAAAGTTATTCCCTTGTGGTCTACGGGGATCATGGTGTCACTTAACATTGGAGGCTCGTTTGGAATACTGCAAGCTAAATCCCTCAACAGACATATCACTCCACACTTTGAATTTCCAGCGGGTTCTTTTGCCGTAGTCTTGGTACTTACAATATTTATATGGGTAGCTCTTTATGATCGTGTGATTATTCCTCTAGCATCAAAACTAAGAGGCAAACCGGTTAGGATCAGTGCCAAGACAAGAATGGGAATTGGGTTGGTTTTCTCTTTTCTCCACTTGGTAACTGCAGCAATTGTTGAGGCTACAAGGCGAAGGAGAGCAATTAGTGAGGGGCATATTGATGACGGACATGCAGTGTTGAATATGTCTGCAATGTGGCTTGTTCCTCAACTTTGTTTGAATGGCATGGCTGAAGCATTCAATGCAATTGGCCAAAATGAGTTCTATTACACTGAGTTTCCTAGAACTATGTCAGGTATCGCTTCTTCTCTTTTTGGACTTGGAATGGCTGCAGGAAATGTGTTATCTAGTTTGGTATTCAGCATTGTGGAAAAGGTTACTTCAAGAGGAGGAAACGAAGGATGGGTTTTAGATAACATTAACAAGGGTCGTTATGACAAGTACTACTGGGTTCTTTCTGGTATGAGTGCTCTTAATATACTGTATTATCTAGTATGCAGTTGGGCTTATGGACCCACAGTTGATCAACTAGCTAAGGTGTCTCATGAAAATAGTTCAAACGAGAAAAAATTAACTCAATTGGGCAATATGAGCCAGCCTGACAAGGCATCCCTTGTTAGTGAAGAAATTGGCTCAAATGATAAAAGAGTTAACTAG 1848 0.421 MKEAKMKKEVELCSSEVEMASEHTPQPQRKKGGIVTMPFIIANEALARVATIGLLPNMILYLMGSYKFHLAKATQVLLLSSATSNLTPLIGAFIADSCLGRFLAVGLGSTITFLGMALLWLTAMFPQARPPPCNPLTERCKQATSGQMTMLISSFALMSIGNGGLSCSIAFGADQVSRKDNPNNQRALEIFFSWYYASTAVSVIIALTVIVYIQDNLGWKVGFGVPAALMFLSIISFFLASPLYVKNKVQGSLITGFARVIVAAYKNRKLPLPPRNSVGMYHRNKDSDFVVPTHKLRFLNKACIIKDQEKDVASDGSASNPWSLCTIDQVEELKAVIKVIPLWSTGIMVSLNIGGSFGILQAKSLNRHITPHFEFPAGSFAVVLVLTIFIWVALYDRVIIPLASKLRGKPVRISAKTRMGIGLVFSFLHLVTAAIVEATRRRRAISEGHIDDGHAVLNMSAMWLVPQLCLNGMAEAFNAIGQNEFYYTEFPRTMSGIASSLFGLGMAAGNVLSSLVFSIVEKVTSRGGNEGWVLDNINKGRYDKYYWVLSGMSALNILYYLVCSWAYGPTVDQLAKVSHENSSNEKKLTQLGNMSQPDKASLVSEEIGSNDKRVN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00235 615 Gene3D MFS general substrate transporter like domains 6 576 IPR036259 -
Cca11g00235 615 Pfam POT family 104 533 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca11g00235 615 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 20 582 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca11g00235 615 SUPERFAMILY MFS general substrate transporter 22 564 IPR036259 -
Cca11g00235 615 MobiDBLite consensus disorder prediction 585 603 - -
Cca11g00235 615 CDD MFS_NPF1_2 37 567 - -
Cca11g00235 615 MobiDBLite consensus disorder prediction 585 615 - -
Cca11g00235 615 PANTHER PEPTIDE/NITRATE TRANSPORTER 20 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00235 Cca-Chr11 2828488 2832048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00235 15 591 Organic Solute Cotransporters AT1G52190 55.726 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00235 - K14638 gmx:100805115 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00191 10 2034076 2038600 Cca11g00235 11 2828488 2832048 PCT