Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00191 ATGGAGAAGGAAATAGAAGCTGCTTCAGTTCATGTAGAGATGACTCAGCAACACATGAGTTCACATGTGCAAAATCGTCGCAAGGGTGGCTTTATTACCATGCCTTTCATTATAGCAAATGAGGCACTTGCTAAGCTGGCTAGTGTTGGGCTTATACCAAACATGATATTGTATCTGATAGAAGATTACAAGCTCCGAGTATTGAAAGCAACCAAAATATTGTTCTTATGGTTTGCTGCTACCAATTTTGCTCCTGTGGTCGGTGCTTTTGTGGCTGATGCTTATTTGGGTCGCTTCCTAGCCATTGCTTTAGGTTCAATTCTCAGTTTTCTGGGAATGGTAGTGTTGTGGTTAACAGCAATGAGCCCAAAAGCAAGGCCTCCCCCTTGCAGCCACTCAGCTGAAAACTGCGAATCTGCAACATCAGCCCAAATGGCTATCTTACTTTCTTGTTTTGCTCTCATATCCATTGGAGGCAGTGGCATCTCATGCTCCTTAGCATTTGGTGCAGACCAACTTAACCGTAACTCCAAACCCAACACTAAGAGCCAGAGGGTCCTTGAGAGCTTCATAAGTTGCTACATTGCTTCTCAAGCCATTGCTGTCGTTTTTTCCTTGACCGGAATAGTTTACATCCAAGACCACTTCGGATGGAAACTCGGTTTTGGGGTTCCGGCAGCACTTATGTTCTTGTCCACTTTCTTGTTCTTCCTCATTTCCCCACGTTATGTCAAGCACAAACCACGCAGCAGCTTGCTCACTGGCTTCGCACAAGTCATTTTCGTTGCTTACAAGAACAGAAACCTTTCATTTCCACCTCAGGACTCCTCTGACATGTATCACCATAAGAAGGACTCCACCCTTGTTGCTCCAACTGATAAACTAAGGTTTCTGAATAAAGCTTGCATCATCAAAGACAGAGAAGAAGACATAGCCTCTGATGGGTCAGCCTCAAACAAATGGAGTCTTTGCACAATAGAGCAAGTGGAAGAACTAAAGGCCATCATCAAAGTCATTCCCATTTGGTCAACCGGTATCATGGTAGCAGTCAGCACCAGCCAAACATCACTTTGGCTTCTCCAAGCCAAAACCATGAACAGACACGTCACTTCAAAGTTCCAAATTCCCGCAGGTTCTTTCGGAGTATTCATGATGTTTGCAGTGTGTGTAACCGCGGTTGTCTACGACCGTGTCATCCTCCCTCTAGCTTCAAAAGTGAGAGGAAAACCGGTAACCATCAGCGCCAAAAAGAGAATAGGAATAGGACTTGTTTTCTCGTGTTTGGACTTCATAGCTTCGGCAGTTGTTGAGGGCATAAGGAGAAGGAAAGCAATTAGTGAGGGTTATATTAATAATCCTAATGCAGTGTTGGACATGTCTGCAATGTGGCTTCTTCCACATAACATATTGTGTGGTATAGCAGAAGCTTTTAATACAATAGGGCAATCAGAGTTTTATTACTCCGAGTTCCCAAGCAGCATGTCAAGCATTGCTGCGTCCCTATTTGGGCTTGGATCTGCTGTGGGAAACTTGGTGGCTTCCCTTATAGTAAGCATTGTGGATAACGTTACTTCAAGAGGTGGAAAAGAAAGTTGGGTTTCGGATAACATTAACAAGGGTCGCTATGATAAGTATTATTGGCTTCTTGCCATAATGAGTGTTGTTAATATACTGTACTATTTGGTTTGTAGTTGGGCTTATGGGCCTAGTGCCGAAGAAGTCTCAAAGAAGGAGGAAGGAGGGAATACTAATAGGGTTCATGATCAACAAGATGAGGCAATGTAA 1785 0.437 MEKEIEAASVHVEMTQQHMSSHVQNRRKGGFITMPFIIANEALAKLASVGLIPNMILYLIEDYKLRVLKATKILFLWFAATNFAPVVGAFVADAYLGRFLAIALGSILSFLGMVVLWLTAMSPKARPPPCSHSAENCESATSAQMAILLSCFALISIGGSGISCSLAFGADQLNRNSKPNTKSQRVLESFISCYIASQAIAVVFSLTGIVYIQDHFGWKLGFGVPAALMFLSTFLFFLISPRYVKHKPRSSLLTGFAQVIFVAYKNRNLSFPPQDSSDMYHHKKDSTLVAPTDKLRFLNKACIIKDREEDIASDGSASNKWSLCTIEQVEELKAIIKVIPIWSTGIMVAVSTSQTSLWLLQAKTMNRHVTSKFQIPAGSFGVFMMFAVCVTAVVYDRVILPLASKVRGKPVTISAKKRIGIGLVFSCLDFIASAVVEGIRRRKAISEGYINNPNAVLDMSAMWLLPHNILCGIAEAFNTIGQSEFYYSEFPSSMSSIAASLFGLGSAVGNLVASLIVSIVDNVTSRGGKESWVSDNINKGRYDKYYWLLAIMSVVNILYYLVCSWAYGPSAEEVSKKEEGGNTNRVHDQQDEAM 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00191 594 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 88 112 IPR018456 GO:0006857|GO:0016020|GO:0022857
Cca10g00191 594 MobiDBLite consensus disorder prediction 574 594 - -
Cca10g00191 594 CDD MFS_NPF1_2 34 567 - -
Cca10g00191 594 Pfam POT family 99 533 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca10g00191 594 Gene3D MFS general substrate transporter like domains 4 576 IPR036259 -
Cca10g00191 594 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT 19 577 - -
Cca10g00191 594 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 577 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca10g00191 594 SUPERFAMILY MFS general substrate transporter 48 575 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00191 Cca-Chr10 2034076 2038600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00191 13 591 Organic Solute Cotransporters AT1G52190 57.338 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00191 - K14638 gmx:100782867 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00191 10 2034076 2038600 Cca11g00235 11 2828488 2832048 PCT