Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00199 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAGAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTTGCAAGTTTATACTCTGGAACTGTATGTATCTGGAACTACCAATCTCAGACCATGTCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCGGCCAAGTTTATTGCACGCAAGCAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACGGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTGTGTGTTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATATGGAATCTTGGCTCTCCTGACCCCAATTTTACACTGGACGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACCGCGAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTCCATCCTGAACTGCCTATAATCATTACAGGCTCTGAAGATGGCACAGTCCGCATTTGGCATTCAACAACTTATAGGCTTGAGAACACCTTGAACTATGGTCTTGAAAGGGTTTGGGCTATTGGATACATGAAAGGTTCACGCCGGGTTGTGATAGGATATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATCATCTGGTCTAAGCATAATGAAATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGGTTGCAGATGGAGAAAGGTTACCGTTGGCTGTTAAGGAATTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGGGAGTATATTATATACACTGCTTTGGCGTGGAGAAATAGATCGTTTGGTTCAGCACTGGAGTTTGTTTGGTCTTCAGATGGGGAGTATGCCGTAAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAACTTCCAGGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAATCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTACATCCTGAAGTACAACCGTGATGTAGTTGCATCATATTTAGATAGTGGAAGCCCTGTAGACGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAACAAATGAACGTGTCAGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGACTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAAGAGTTCAATGTTATTGGATACACGCTACTTTTAAGCTTGATTGAGTACAAGACTCTTGTCATGCGTGGTGATTTGGAAAGGGCCAATGAAATCCTACCATCAATTCCTAAAGAGCATCATAACAGTGTGGCTCGTTTCTTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTATAGGTTTGATCTGGCCATACAGCTTGGAAGATTAGAAGTTGCCAAGGGTATTGCCACTGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTGGCTATTTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAAAATGCAATGGATTTGAGTGGGTTATTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATGTCAAAACTGGCCACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTGTTGGTAGAAAGCAATCGGATTCCAGAGGCTACTTTAATGGCCCGATCCTATCTCCCAAGCAAAGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGTTGCAGAAACAAGGGGTGTTTACCATCCTGCAGCGGAGTACATCAACCAGGCTGATAAATCACATAGCACCCTTGTTGAAGCTTTCAGAAACATGATGATAGAAGAGGAGGATCAGCCTCTTGAGAATGGGGACTCTAACCATGAGTTGACTGAACAAAATGGAACAGAGCACTACACTGAGGAACATGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCGGATTCTACTGATGGTGCAGTGCTCATCAATGGTAATGAAGCCGATGAAGAGTAG 2730 0.4198 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMSKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPCVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWSKHNEIQTVNIRSVGADVEVADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPVDEQGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIATEVQSESKWKQLGELAISTGKLEMAEECLKNAMDLSGLLLLYSSLGDAEGMSKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEATLMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFDDWQVALAVESKVAETRGVYHPAAEYINQADKSHSTLVEAFRNMMIEEEDQPLENGDSNHELTEQNGTEHYTEEHEEQNGEEGSQEEAVVVDADSTDGAVLINGNEADEE 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00199 909 MobiDBLite consensus disorder prediction 850 909 - -
Cca11g00199 909 MobiDBLite consensus disorder prediction 850 877 - -
Cca11g00199 909 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Cca11g00199 909 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Cca11g00199 909 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Cca11g00199 909 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Cca11g00199 909 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Cca11g00199 909 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Cca11g00199 909 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Cca11g00199 909 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Cca11g00199 909 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Cca11g00199 909 Gene3D - 590 798 - -
Cca11g00199 909 CDD WD40 17 297 - -
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Cca11g00199 909 PANTHER COATOMER SUBUNIT BETA' 1 872 - -
Cca11g00199 909 SMART WD40_4 46 85 IPR001680 GO:0005515
Cca11g00199 909 SMART WD40_4 218 257 IPR001680 GO:0005515
Cca11g00199 909 SMART WD40_4 88 127 IPR001680 GO:0005515
Cca11g00199 909 SMART WD40_4 174 215 IPR001680 GO:0005515
Cca11g00199 909 SMART WD40_4 4 43 IPR001680 GO:0005515
Cca11g00199 909 SMART WD40_4 131 171 IPR001680 GO:0005515
Cca11g00199 909 Gene3D - 11 300 IPR015943 GO:0005515
Cca11g00199 909 PANTHER COATOMER 1 872 - -
Cca11g00199 909 PIRSF Beta'-COP 2 890 IPR016453 -
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Cca11g00199 909 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Cca11g00199 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00199 Cca-Chr11 2459189 2471001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00199 51 309 Miscellaneous Gene Families AT5G08390 24.906 5.48e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00199 K17302 - gmx:100797508 1757.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00199 11 2459189 2471001 Cca11g00199 11 2459189 2471001 ECH
Cca10g00155 10 1708333 1719867 Cca11g00199 11 2459189 2471001 PCT