Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00155 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAGAGAGTAAAATGCGTGGATCTGCATCCGACAGAGCCATGGATTCTGGCGAGTTTATACTCTGGAACTGTCTGTATCTGGAACTATCAATCTCAGACCATGGCCAAGTCCTTTGAGGTTACTGAGTTACCAGTTAGATCAGCCAAGTTTATTGCACGCAGACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTTTTCGAAGCACATACTGATTACATTAGGTGTGTGGCCGTTCATCCTACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGGTCTGTACCCAGATATTTGAAGGCCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCTAGTGCATCTCTTGATCGAACAATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCGTATCTAATCACTGGCTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCAACAACTTATAGGCTTGAGAACACATTAAATTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAAGCTTCACGTCGGGTTGTGATTGGTTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGGTTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAATTGGGCAATTGTGATCTCTACCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATTTACACTGCATTGGCATGGAGAAATAGGTCATTCGGTTCAGCTCTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGGTGTTAGGGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAAAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGTACTTTACTGGCAATGTGCTCCAACGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCCAGTGACACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTGTAGCACATTTAGATAGTGGAAGACCTGTAGATGAGGAAGGAGTTGAAGATGCTTTTGAGCTCTTGCATGAAATGAATGAACGTGTCAGGACAGGTATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGTTATCTTGCAAACCAAAGCCGTGTTTATTTGATTGACAAAGAGTTCAATGTTATGGGATACACACTGCTTTTAAGCTTGATCGAATACAAGACACTTGTGATGCGTGGGGATTTGGATAGGGCCAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCATTTCCTGGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGATTTGATCTAGCAATACAGCTTGGAAAACTAGATGTTGCTAAGAGTATTGCAATAGAATTGCAGAGTGAGCCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTGGAAATGGCTGAAGAATGTTTAAAGCATGCAATGGATTTGAGTGGGTTGTTACTGCTATATTCTTCTTTTGGAGATGCTGAAGGAATATCAAAATTAGCGATCCTTGCTAAGGAACAAGGGAAGAACAATGTAGCATTTCTTTGCTTATTTACGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAGGTAAGGTCTCAGAAATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATTCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTCGAATCTAAAGCTGCAGAAACAAGGAATGTGTACCCCCCTGCAGACCAGTACGTCAACCATGCTGACAAATCACACATTACCCTTGTTGAAGCTTTTAGAAACATGCAGATTGAGGAAGAAGTAGAAGAGCGTCTGGAGAATGGGGACTCTACTCAGGAGttgACTGAACAAAATGGAGAAGAGCACTACACAGAGGAACAGAACGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGACGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 2757 0.4128 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKASRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEVADGERLPLAVKELGNCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYGVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVVAHLDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLDRANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIQLGKLDVAKSIAIELQSEPKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSFGDAEGISKLAILAKEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPGKVSEIVAIWRKDLNKVNSKAAESLADPEEYPNLFEDWQVALAVESKAAETRNVYPPADQYVNHADKSHITLVEAFRNMQIEEEVEERLENGDSTQELTEQNGEEHYTEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEADEEWGTNNEGAPSA 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00155 918 MobiDBLite consensus disorder prediction 850 877 - -
Cca10g00155 918 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Cca10g00155 918 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Cca10g00155 918 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Cca10g00155 918 PIRSF Beta'-COP 2 885 IPR016453 -
Cca10g00155 918 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Cca10g00155 918 PANTHER COATOMER SUBUNIT BETA' 1 875 - -
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Cca10g00155 918 Gene3D - 11 300 IPR015943 GO:0005515
Cca10g00155 918 SMART WD40_4 4 43 IPR001680 GO:0005515
Cca10g00155 918 SMART WD40_4 174 215 IPR001680 GO:0005515
Cca10g00155 918 SMART WD40_4 46 85 IPR001680 GO:0005515
Cca10g00155 918 SMART WD40_4 218 257 IPR001680 GO:0005515
Cca10g00155 918 SMART WD40_4 88 127 IPR001680 GO:0005515
Cca10g00155 918 SMART WD40_4 131 171 IPR001680 GO:0005515
Cca10g00155 918 Gene3D - 590 798 - -
Cca10g00155 918 CDD WD40 17 297 - -
Cca10g00155 918 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Cca10g00155 918 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Cca10g00155 918 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Cca10g00155 918 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Cca10g00155 918 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Cca10g00155 918 SUPERFAMILY WD40 repeat-like 227 500 IPR036322 GO:0005515
Cca10g00155 918 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Cca10g00155 918 MobiDBLite consensus disorder prediction 850 918 - -
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Cca10g00155 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Cca10g00155 918 PANTHER COATOMER 1 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00155 Cca-Chr10 1708333 1719867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00155 60 367 Miscellaneous Gene Families AT5G08390 22.899 2.16e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00155 K17302 - gmx:106794271 1806.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00155 10 1708333 1719867 Cca10g00155 10 1708333 1719867 ECH
Cca10g00155 10 1708333 1719867 Cca11g00199 11 2459189 2471001 PCT