Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00195 aTGGGTGCTTCTCTTCCCCCCAAGGAGGCTAACCTCTTCAAGCTTATTGTCAAATCATATGAAACCAAACAATATAAGAAGGGCCTCAAAGCAGCTGATGCCATTTTGAAAAAATTTCCAGATCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGACAAGGATTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGATCAGACAGAGAATACCGGGAGGCAATCAAGTGCTACCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATTCTTCGTGACCTATCACTCCTTCAGGCACAAATGCGAGATTTAACAGGCTTTGTTGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAACTGGATTGGATTCTCTGTTGCCCATCATTTGAACTCTAATGCATCTAAAGCAGTTGAAATTTTGGAAGCGTATGAAGGAACCTTGGAAGATGATTATCCTCCAGATAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGAACTCATTGTTAGAGGAATGTGGATTTCTTGAGAGAGCTCTGGAGGAGTTGCACAAAAAAGAATCTAAAATTGTTGATAAACTTGCATTCAAAGAACAAGAAGTTTCACTTCTAGTAAAGCTTGGTCACTTAGAAGAAGGCGAAGCTTTGTACCGGGCATTACTTTCCATGAATCCTGATAATTATAGATACTATGAAGGTCTCCAAAAGTGTGTTGGATTATATTTAGAAGATGGCCAGTACTCTCATGATCAAATAGATCAGTTAGATTCATTGTACAAAACACTTGCACAACAATACAAGTGGTCTTCTGCTGTTAAGAGAATACCACTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCCTAACCAAGGGAGTGCCATCTCTATTCTCTGATCTATCATCTCTGTACAATCACCCTGGGAAGGCGGACATTTTGGAACAACTTATTCTTGAGTTGGAGCATTCAATTAGGATGTCAGGCCAATATCCTGGAAGGGTGGAAAAAGAACCCCCTTCAACTCTTATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGGCGTGGCCAATACGAAATTTCTCTTTCTAAAATTGATGAAGCTATAGAACATACACCTACGGTCATTGATCTTTATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGTGAATGTGTGAAGCGCATGCTGCAAGCTGATCAGGTGACTTTGGCCGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCATCGGGTGAAAGCTATTTCCGTCAGGGTGATCTTGGACGGGCTCTCAAGAAATTTTTAGCAGTGGAGAAGCATTATGCTGATATTACTGAGGACCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACTCTACGTACTTATGTGGAAATGCTTAAATTTCAAGACCAATTGCACTCTCATGCATATTTTCATAAAGCAGCAGCTGGTGCTATCAGATGCTATATTAAGCTGCATGATTCTCCCCCAAAGTCAACAACAGAGGAAGATGATAACATGTCAAAGTTGCTTCCTTCACAGAAGAAGAAAATGAGACAAAAGCAGAGAAAGGCAGAAAGAGCCAAGAAAGAGGCAGAAGAAAAGAATGAAGAATCAAGTGCGAGTGGGGTATCAAAGTCTGGGAAGCGGCATGTAAAACCTGTTGATCCTGATCCAAATGGGGAGAAGTTGTTGCAGGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGCTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACACACTTGCTCTCTTTTGAACTATATACAAGGAAACAAAAAATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTACTGAGATTGGATGCTGAACACCCTGATTCTCATCGTTGCTTGATTAAGTTCTTCCATAAAGTGGGATCCATTAATGCTCCTGTGACTGACAGTGAGAAACTGATTTGGAGTGTCTTAGAAGCTGAGCGTCCAAATATTAGTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAATCATAAAGATTCTTTGATGCATCGAGCAGCTTTTGCCGAAATCTTGCACATTTTGGATTCAAACAGAAAGTCTGAGGCTGTTAAGTTCATTGAGGAGTCAACAAATAAAATTGTGCCCAGAAATGGAGCTCTTGGACCAATCAGGGAATGGAAACTAAAAGACTGCATTGCAGTTCACAAGCTTCTTGGAACAGTTCTTGCTGATCAGGATGCTGCATTGAGATGGAAAGTGCGTTGTGCAGAGTACTACCCTTATTCTACATACTTTGAGGGAAGCCACAGCTCTGCCTCTCCCAACTCGGCCTTCAATCAGTTACGTAAGAACTCTGAAAATGAGAGTTCTAACCATTCAGTGGTTAGTCAAAACGTAGGTTCCATCAAATCAAACGGGAAACTGGAGGCATTTAAAGATCTCACTATCTGA 2703 0.4044 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKNSLLEECGFLERALEELHKKESKIVDKLAFKEQEVSLLVKLGHLEEGEALYRALLSMNPDNYRYYEGLQKCVGLYLEDGQYSHDQIDQLDSLYKTLAQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEHSIRMSGQYPGRVEKEPPSTLMWTLFLLAQHYDRRGQYEISLSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVTLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHAYFHKAAAGAIRCYIKLHDSPPKSTTEEDDNMSKLLPSQKKKMRQKQRKAERAKKEAEEKNEESSASGVSKSGKRHVKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKILLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVGSINAPVTDSEKLIWSVLEAERPNISQLHEKSLFEANNSFLENHKDSLMHRAAFAEILHILDSNRKSEAVKFIEESTNKIVPRNGALGPIREWKLKDCIAVHKLLGTVLADQDAALRWKVRCAEYYPYSTYFEGSHSSASPNSAFNQLRKNSENESSNHSVVSQNVGSIKSNGKLEAFKDLTI 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00195 900 Pfam TPR repeat 84 123 - -
Cca11g00195 900 SMART tpr_5 380 413 IPR019734 GO:0005515
Cca11g00195 900 SMART tpr_5 77 110 IPR019734 GO:0005515
Cca11g00195 900 SMART tpr_5 43 76 IPR019734 GO:0005515
Cca11g00195 900 SUPERFAMILY TPR-like 381 706 IPR011990 GO:0005515
Cca11g00195 900 PIRSF NAT_A 1 817 IPR021183 -
Cca11g00195 900 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 879 - -
Cca11g00195 900 Coils Coil 195 215 - -
Cca11g00195 900 MobiDBLite consensus disorder prediction 606 621 - -
Cca11g00195 900 PANTHER BNAC02G23120D PROTEIN 10 879 - -
Cca11g00195 900 MobiDBLite consensus disorder prediction 851 882 - -
Cca11g00195 900 Gene3D - 2 503 - -
Cca11g00195 900 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Cca11g00195 900 Coils Coil 592 623 - -
Cca11g00195 900 MobiDBLite consensus disorder prediction 577 593 - -
Cca11g00195 900 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 695 IPR021183 -
Cca11g00195 900 MobiDBLite consensus disorder prediction 576 645 - -
Cca11g00195 900 Gene3D - 505 724 - -
Cca11g00195 900 SUPERFAMILY TPR-like 21 262 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00195 Cca-Chr11 2394061 2414319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00195 K20792 - gmx:100820094 1672.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00195 11 2394061 2414319 Cca11g00195 11 2394061 2414319 ECH
Cca10g00143 10 1538972 1560048 Cca11g00195 11 2394061 2414319 PCT