Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00143 ATGGCTGCTTCTCTTCCTTCCAAAGAGGCCAACCTCTTCAAACTTATTGTCAAATCCTATGAAACCAAACAATACAAAAAAGGCCTCAAAGCAGCCGATTCCATTTTGAAAAAATTCCCAAACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTAAATTGTATGGATCGTAAGTCTGAGGCATACGAACTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGCCATGTTTGCTGGCATGTTTTTGGTCTACTGTACCGGTCAGACAGAGAATATAGGGAAGCAATAAAGTGCTATCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATCTTGCGGGACCTATCACTTTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGACAACAACTTTTGACACTCAAGTCAAATCACCGCATGAACTGGATTGGCTTTGCTGTCGCACACCATTTAAACTCAAATGCATCAAAGGCTATTGAAATTCTGGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCAGAAAATGAACGCTGTGAGCATGGGGAAATGCTTTTGTATAAGATCTCTTTGTTAGAAGAATGCGGATTTTTTGAAAAGGCTCTTGAGGAGTTGCAAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCATATAAAGAACAGGAGGTTTCACTTTTAGTCAAGCTTGACTGCTTAGAAGAAGGGGAGAAATTGTACCGGGCATTACTTTCCATGAATCCTGACAATTATAGATATTATGAAGGCCTCCAAAAATGTGTTGGATTATATTCAGAAAATGGCCATTTTTCTCCTGATGAAATTGATCGGTTAGATGCCTTGTACAAAACACTAGGGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTTTTACAAAGTGACAAGTTTCGAGAAGCAGCAGATAGGTATATTAGGCCTCTCCTAACTAAGGGTGTCCCATCTCTATTCTCTGATCTTTCTTCATTATACAATCAACCTGGGAAGGTCAACATTTTGGAACAGATCATTCTTGAGTTAGAGAGTTCAATTAAGAGCACTGGCCAATACCCTGGAAGGATGGAAAAAGACCCACCCTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGCATTATGATAGACGGGGCCAATATGACATTGCTCTTTCTAAAATTGATGAGGCTATTGATCATACACCCACTGTCATTGATCTGTATTCAGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTCATGTTAATAGTGAATGCATTAAGCGCATGCTGCAGGCTGATCAGGTGTCTTTGGCAGAAAAAACTGCAGTGTTGTTCACAAAAGATGGTGATCAACACAACAACCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTGGCTCTCAAGAAATTTCTAGCTGTGGAGAAGCATTATGCAGATATTGCAGAAGATCAATTTGATTTTCATTCATATTGCTTAAGGAAAATGACATTGCGTACATATGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCACATGCATACTTTCATAAAGCAGCTGCTGGTGCTATCAGATGTTATATAAAATTGCATGATTCTCCTCCAAAGTCTTCATCTGAGGAAGATAATGACATGTCTAAGTTGCTTCCTTCTCAGAAAAAGAAATTGAGGCAAAGACTGAGAAAGGCAGAAGCAAGAGCTAAGAAAGAGGCTGAAGAAAAAAATGAAGAATCAAGTGCTGGTGGGATATCAAAATCTGGAAAACGGCATGCAAAACCTGTTGATCCAGATTCACGTGGTGAAAAATTATTGCAGGTTGGAGATCCATTGTTAGAAGCCACAAAATACTTGAAGCTTCTATAG 1992 0.3966 MAASLPSKEANLFKLIVKSYETKQYKKGLKAADSILKKFPNHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAIEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECGFFEKALEELQKKELKIVDKLAYKEQEVSLLVKLDCLEEGEKLYRALLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDRLDALYKTLGQQYKWSSAVKRIPLDFLQSDKFREAADRYIRPLLTKGVPSLFSDLSSLYNQPGKVNILEQIILELESSIKSTGQYPGRMEKDPPSTLMWTLFLLAQHYDRRGQYDIALSKIDEAIDHTPTVIDLYSVKSRILKHAGDLAAAAAFADEARCMDLADRHVNSECIKRMLQADQVSLAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHYADIAEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHAYFHKAAAGAIRCYIKLHDSPPKSSSEEDNDMSKLLPSQKKKLRQRLRKAEARAKKEAEEKNEESSAGGISKSGKRHAKPVDPDSRGEKLLQVGDPLLEATKYLKLL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00143 663 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 663 - -
Cca10g00143 663 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 663 IPR021183 -
Cca10g00143 663 SMART tpr_5 43 76 IPR019734 GO:0005515
Cca10g00143 663 SMART tpr_5 77 110 IPR019734 GO:0005515
Cca10g00143 663 SMART tpr_5 380 413 IPR019734 GO:0005515
Cca10g00143 663 Gene3D - 505 663 - -
Cca10g00143 663 MobiDBLite consensus disorder prediction 577 594 - -
Cca10g00143 663 Coils Coil 596 623 - -
Cca10g00143 663 PIRSF NAT_A 1 663 IPR021183 -
Cca10g00143 663 Gene3D - 2 503 - -
Cca10g00143 663 PANTHER BNAC02G23120D PROTEIN 10 663 - -
Cca10g00143 663 SUPERFAMILY TPR-like 379 525 IPR011990 GO:0005515
Cca10g00143 663 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Cca10g00143 663 Pfam TPR repeat 84 123 - -
Cca10g00143 663 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Cca10g00143 663 SUPERFAMILY TPR-like 60 267 IPR011990 GO:0005515
Cca10g00143 663 MobiDBLite consensus disorder prediction 606 622 - -
Cca10g00143 663 MobiDBLite consensus disorder prediction 577 649 - -
Cca10g00143 663 MobiDBLite consensus disorder prediction 631 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00143 Cca-Chr10 1538972 1560048 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00143 K20792 - gmx:100776968 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00143 10 1538972 1560048 Cca10g00143 10 1538972 1560048 ECH
Cca10g00143 10 1538972 1560048 Cca11g00195 11 2394061 2414319 PCT