Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00189 ATGCCTTCTCTCTCTGAAGCCTTTCGAGGCCACCCCGTGTACCTTCACCACAAACACCCCGACTTCAACTCCCTCCAAAAACTCCCCGATTCCTACGCTTGGACTACGCAACCAGATAACCATATTCACCCTAACTCCACCGTCCCCGTAATCGACTTCAACCACCCCAACGCTCCTAACCTCGTTCGCCATGCATGCAGAACATGGGGTGTCTTCCAACTCATCAGCCATGGCGTCCCCATCAGCCTCTTCGCTCGCATGCACAAAGCCACCCTCGCCCTCTTCTCCCTTCCTCTTCACCAGAAGCTCAAAGCTGCTCGCTCCCCCGACGCCGTCTCCGGCTATGGCCGCGCTCGCATCTCCTCCTTCTTCCCCAAGCTCATGTGGTCTGAGTGCTTCACCATCATTGATTCCCCTCTTCAACTTTTCCTCCACCTCTGGCCTCAACATTATGCTATATACTGTGATATTGTGATGGAATATCAAGCAGCCATGGAGAAGCTAGCAGCGAAGTTAATGTGCCTCGTGTTGGCTTCACTTGGGATTTCAAAGGAGGACATTAAATGGGCTGGGCCGAGAGGGGAATTCGACGGGGCTTGTGCGGCCTTGCATTTGAATTCTTACCCGAGTTGCCCGGATCCGGATCGGGCCATGGGTCTAGCCGCACACACGGACTCCACTCTGCTCACAATCCTGCACCAAAACAATGTGAATGGGCTTCAGGTTCTCAAGGAAGGTGAAGGGTGGGTGGCGGTGCCGCCGCTTCCCGGAGGGCTGGTGATCAACGTGGGCGATCTGCTCCACATTTTGTCAAACGGGTTGTACCCGAGTGTGGTCCACCGGGTGCGGGTGAACCGCACCCGCCAGCGGTTCTCGGTTGCTTATCTATATGGGCCCCCAACAAACGTGGAAATCAGTCCACATGTGAAGTTAGTGGGCCCAACTAGGCCCGCACTTTATCGGTCAGTGACTTGGAACGAGTACCTTGGCACCAAAGCAAAGCATTTCAACAAGGCTCTCTCCTCGGTTAGGCTTTCTGAACCTATTAACAGTTCGTTTGATGTAAACGAGGATGAGAGTAACGACCTTGAAGTGGTCCAGCTAGATAGCCCATAG 1116 0.5412 MPSLSEAFRGHPVYLHHKHPDFNSLQKLPDSYAWTTQPDNHIHPNSTVPVIDFNHPNAPNLVRHACRTWGVFQLISHGVPISLFARMHKATLALFSLPLHQKLKAARSPDAVSGYGRARISSFFPKLMWSECFTIIDSPLQLFLHLWPQHYAIYCDIVMEYQAAMEKLAAKLMCLVLASLGISKEDIKWAGPRGEFDGACAALHLNSYPSCPDPDRAMGLAAHTDSTLLTILHQNNVNGLQVLKEGEGWVAVPPLPGGLVINVGDLLHILSNGLYPSVVHRVRVNRTRQRFSVAYLYGPPTNVEISPHVKLVGPTRPALYRSVTWNEYLGTKAKHFNKALSSVRLSEPINSSFDVNEDESNDLEVVQLDSP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00189 371 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 198 299 IPR005123 -
Cca11g00189 371 Gene3D - 21 339 IPR027443 -
Cca11g00189 371 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 357 - -
Cca11g00189 371 Pfam 2OG-Fe(II) oxygenase superfamily 203 299 IPR044861 -
Cca11g00189 371 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 357 - -
Cca11g00189 371 Pfam non-haem dioxygenase in morphine synthesis N-terminal 48 138 IPR026992 -
Cca11g00189 371 SUPERFAMILY Clavaminate synthase-like 15 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00189 Cca-Chr11 2310855 2312716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00189 48 340 Glycosyltransferase AT5G59530 30.573 9.59e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00189 K04124 - gmx:100794180 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00189 11 2310855 2312716 Cca11g00189 11 2310855 2312716 ECH
Cca10g00133 10 1455171 1457344 Cca11g00189 11 2310855 2312716 PCT